Query= PF13_0309 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) hypothetical
protein
(1218 letters)
>YLR409C UTP21 SGDID:S000004401, Chr XII from 937231-934412, reverse
complement, Uncharacterized ORF, "Possible U3 snoRNP
protein involved in maturation of pre-18S rRNA, based on
computational analysis of large-scale protein-protein
interaction data"
Length = 939
Score = 87.8 bits (216), Expect = 4e-21
Identities = 109/496 (21%), Positives = 212/496 (42%), Gaps = 70/496 (14%)
Query: 680 YATSVLISSCGHIGIVGYNDGEIHSFNIQSTTYRNEYKLNKYSISSKAHINGNILKLYLY 739
+ SV +S CG+ G +G ++G I +N+QS R +YKL+K +++ ++G K+
Sbjct: 462 FVKSVAMSQCGNFGFIGSSNGSITIYNMQSGILRKKYKLHKRAVTG-ISLDGMNRKMVSC 520
Query: 740 GINYFVSASSSKEDTCLRVWNIYTSDLIYVYNIKNEYTNSVEDIHIVSFYHYNILTAVCL 799
G++ V + T L + VY+ ++ L A+ L
Sbjct: 521 GLDGIVGFYDFNKSTLLGKLKLDAPITAMVYHRSSD------------------LFALAL 562
Query: 800 SNNHTLILD-IEQKCITRKFHFAFLVTNIIFSKDNRLIFFALQNNTLLIYDIISNTFVDY 858
+ +++D + Q+ + + + + +T FS + R I A ++T+ +D+ + +D
Sbjct: 563 DDLSIVVIDAVTQRVVRQLWGHSNRITAFDFSPEGRWIVSASLDSTIRTWDLPTGGCIDG 622
Query: 859 LLFKNSVTSMVY--DDIYLYTAHKNSYNFVYSFTNKNLFNKYNYYVSDYKSFHAIPIEVF 916
++ N T++ + + L T H N + +TN+ F V
Sbjct: 623 IIVDNVATNVKFSPNGDLLATTHVTG-NGICIWTNRAQFK-----------------TVS 664
Query: 917 SDTEDEKSYNIMNIKDLINMNEQSEDNLNNNINEKLSKHDEPINESEKNDYVNIMETYTS 976
+ T DE + M L + + + D++ + E S E +N+ + N TYTS
Sbjct: 665 TRTIDESEFARM---ALPSTSVRGNDSMLSGALE--SNGGEDLNDIDFN-------TYTS 712
Query: 977 SENQINKNLITLSGFNISKIAYLIFLDKIKDKCKVEENVKRNDEIPFFLSTKLDKNIEYK 1036
E QI+K L+TLS SK+ L+ LD I+ + K +E K+++++PFFL +K
Sbjct: 713 LE-QIDKELLTLSIGPRSKMNTLLHLDVIRKRSKPKEAPKKSEKLPFFLQLSGEK---VG 768
Query: 1037 DDKEEQFLQNVTNNLENKTXXXXXXXXXXXXXXXXXXXXXXXIVKSKHIGKNSKIQIPSS 1096
D+ +V + ++T + +G S +
Sbjct: 769 DE------ASVREGIAHETPEEIHRRDQEAQKKLDAEEQMNKFKVTGRLGFESHF---TK 819
Query: 1097 KLQEILSKNEESYIKVLKYFKSLSPSGIHYNILCLSTKEELENMMNF---FIYHVKTNDN 1153
+L+E + Y +L + SP+ + I L++ E + ++ F +K+N N
Sbjct: 820 QLRE--GSQSKDYSSLLATLINFSPAAVDLEIRSLNSFEPFDEIVWFIDALTQGLKSNKN 877
Query: 1154 VDLIQAYLFIFLKAHG 1169
+L + ++ + KAHG
Sbjct: 878 FELYETFMSLLFKAHG 893
Score = 31.6 bits (70), Expect = 3e-04
Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 11/134 (8%)
Query: 92 NIKEEHQDENIYTE-KNYKNIIPSKESNLLIANGTTGIIVHNGIMCLSMKGIQPFIITSV 150
++K+ +E++ + KN K P + +I N + G+ G + G +I+T V
Sbjct: 4 DLKKRKVEEDVRSRGKNSKIFSPFR----IIGNVSNGVPFATGTL-----GSTFYIVTCV 54
Query: 151 KNSFCVYDPHKLRKAFLSEYFL-EDIKNLYSTNNFVYVIFKRQVYKINDNGNKKIFSDHH 209
+F +YD + L F+SE I L + ++VY ++ +V + +
Sbjct: 55 GKTFQIYDANTLHLLFVSEKETPSSIVALSAHFHYVYAAYENKVGIYKRGIEEHLLELET 114
Query: 210 KYNIINILITSDYL 223
N+ ++ I DYL
Sbjct: 115 DANVEHLCIFGDYL 128
Score = 26.6 bits (57), Expect = 0.011
Identities = 24/126 (19%), Positives = 57/126 (45%), Gaps = 28/126 (22%)
Query: 355 TTNENKIYLYNIN--KEKIIHE-YKAINILCLNEEKYIKIITPTLKNEELCIITSSNELY 411
+T++N I++Y + ++K E Y + + + + + + +L ++T SN L
Sbjct: 131 STDDNSIFIYKKSDPQDKYPSEFYTKLTVTEIQGGEIVSLQHLATYLNKLTVVTKSNVL- 189
Query: 412 ILDIEKDQIVYTKNIHMNDDFVSCVSFYTYQFNDEMNY--------IILIGTENGKLLMI 463
+ ++ ++V+T N +F D++ II +GT G+++M
Sbjct: 190 LFNVRTGKLVFTSN----------------EFPDQITTAEPAPVLDIIALGTVTGEVIMF 233
Query: 464 NLKNNQ 469
N++ +
Sbjct: 234 NMRKGK 239
Score = 22.7 bits (47), Expect = 0.15
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 354 ITTNENKIYLYNINKEKIIHEYKAINILCLNEEKYIKIITPTLKNEELCIITSSNE 409
+ T+ + Y++++ IH K I+ E Y + T N + I+TS +
Sbjct: 266 VGTSSGDLIFYDLDRRSRIHVLKNIH-----RESYGGVTQATFLNGQPIIVTSGGD 316
Score = 18.5 bits (36), Expect = 2.9
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 453 IGTENGKLLMINLKNNQYFIRRDVHDYVKT-ILVSGQG-YIYTCGYD 497
IG+ NG + + N+++ + +H T I + G + +CG D
Sbjct: 477 IGSSNGSITIYNMQSGILRKKYKLHKRAVTGISLDGMNRKMVSCGLD 523
Score = 16.9 bits (32), Expect = 8.4
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 1086 GKNSKIQIP 1094
GKNSKI P
Sbjct: 18 GKNSKIFSP 26
Lambda K H
0.316 0.134 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2299
Number of extensions: 137
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 1218
Length of database: 939
Length adjustment: 45
Effective length of query: 1173
Effective length of database: 894
Effective search space: 1048662
Effective search space used: 1048662
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 32 (17.5 bits)
S2: 32 (16.9 bits)