Query= PF13_0310 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) hypothetical
protein
(734 letters)
>YDL153C SAS10 SGDID:S000002312, Chr IV from 183019-181187, reverse
complement, Verified ORF, "Component of the small
(ribosomal) subunit (SSU) processosome required for
pre-18S rRNa processing; essential nucleolar protein
that, when overproduced, disrupts silencing"
Length = 610
Score = 49.3 bits (116), Expect = 6e-10
Identities = 47/180 (26%), Positives = 70/180 (38%), Gaps = 33/180 (18%)
Query: 581 DDFVSYKK---------FDKNKQKTFNTNEYKDQQNNTYGKKKIHDEIDDEHIKNMLNXX 631
DD + YK+ D+ +++ + N D + YG +DE + +N
Sbjct: 437 DDDIPYKERLFERQQRLLDEARKRGMHDNNGADLDDKDYGS-------EDEAVSRSINTQ 489
Query: 632 XXXXXXXXXXXXXXNKQIRKKLVDE---------------ENEEVD-RRMPNQKIMQNKG 675
+K+I +K + EN D +R N +I++NKG
Sbjct: 490 GENDYYQQVQRGKQDKKISRKEAHKNAVIAAREGKLAELAENVSGDGKRAINYQILKNKG 549
Query: 676 LVRKRKSTDGNARVHNRFKYMKKMKVYNSQHAKLKVHDNN-YSGEKRGINPYLKKSVDIK 734
L KR + N+RV R KY K K S A + Y GEK GI L +SV K
Sbjct: 550 LTPKRNKDNRNSRVKKRKKYQKAQKKLKSVRAVYSGGQSGVYEGEKTGIKKGLTRSVKFK 609
Score = 17.7 bits (34), Expect = 1.9
Identities = 5/11 (45%), Positives = 9/11 (81%)
Query: 654 VDEENEEVDRR 664
+DE++E +D R
Sbjct: 66 MDEDDESIDER 76
Score = 17.3 bits (33), Expect = 2.4
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 652 KLVDEENEEVDRRMPNQKIMQNKGLVRKRKSTDGNAR 688
K+ +EN++ DR + I + L +++ AR
Sbjct: 422 KIDQQENKKTDRFKGDDDIPYKERLFERQQRLLDEAR 458
Score = 16.9 bits (32), Expect = 3.2
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 578 NPNDDFVSYKKFDKNKQKTFNTNEYKDQQN 607
N DDF S ++ Q TF + D +
Sbjct: 24 NEVDDFASKREKVLLGQSTFGDSNKDDDHS 53
Score = 16.9 bits (32), Expect = 3.2
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 655 DEENEEVDRRMPNQKI 670
+EE EE+D +KI
Sbjct: 81 EEEEEELDGAAAYKKI 96
Score = 16.5 bits (31), Expect = 4.1
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 591 KNKQKTFNTNEYKDQQNNTYGKKKIHDEIDDEHIKN 626
K + N N+Y D++ K E D KN
Sbjct: 153 KKHLEELNMNDYLDEEEEEEWVKSA-KEFDMGEFKN 187
Score = 16.2 bits (30), Expect = 5.4
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 646 NKQIRKKLVDEENEE 660
NK L+++E+EE
Sbjct: 47 NKDDDHSLLEDEDEE 61
Score = 16.2 bits (30), Expect = 5.4
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 646 NKQIRKKLVDEENEEVD 662
+++ R+ +EE E+VD
Sbjct: 352 DEEERESDEEEEEEDVD 368
Score = 16.2 bits (30), Expect = 5.4
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 189 DKQEEIKQLVMSEQQEYL 206
D++EE + + + + +EY+
Sbjct: 359 DEEEEEEDVDIDDFEEYV 376
Score = 15.8 bits (29), Expect = 7.1
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 653 LVDEENEEV 661
L DE+ EEV
Sbjct: 55 LEDEDEEEV 63
Lambda K H
0.311 0.130 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 931
Number of extensions: 54
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 12
Length of query: 734
Length of database: 610
Length adjustment: 39
Effective length of query: 695
Effective length of database: 571
Effective search space: 396845
Effective search space used: 396845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.5 bits)
S2: 28 (15.4 bits)