Query= PF13_0315 Pf Annotation|Plasmodium_falciparum_Sanger|(protein coding) RNA binding protein, putative (509 letters)
>YGR159C NSR1 SGDID:S000003391, Chr VII from 807661-806417, reverse
           complement, Verified ORF, "Nucleolar protein that binds
           nuclear localization sequences, required for pre-rRNA
           processing and ribosome biogenesis"
          Length = 414

 Score = 73.6 bits (179), Expect = 1e-17
 Identities = 64/254 (25%), Positives = 115/254 (45%), Gaps = 17/254 (6%)

Query: 23  QDKNENTSEVNDYSKEDIEGDENLKSSKG----KQENNTKS--SSDKDENTIDYGNHDFP 76
           +++ E      + SKE    D +  SS      K+E+N K   S D +E   +  ++   
Sbjct: 100 EEEEEKEETKKEESKESSSSDSSSSSSSDSESEKEESNDKKRKSEDAEEEEDEESSNKKQ 159

Query: 77  CNPAPPVPIKLFIGRVPKNIEEDQLRPIFEEYGIVNEVVIIRDKITNVHKSSAFVKMASI 136
            N     P  +F+GR+  +I+++ L+  FE  G V    +I ++ T+  +   +V   + 
Sbjct: 160 KNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENK 219

Query: 137 SEADNAIRLLNNQ----KTLDAQLGSLQVKYASGELNKLGFPQNIESGVDQAKLFIGSLP 192
           S A+ AI+ +  +    + ++  + + +    +    K G   +  S      LF+G+L 
Sbjct: 220 SYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDT----LFLGNLS 275

Query: 193 KNITEDNIKEMFSPYGTVEEVFIMKDNSTGLGKGCSFVKFSYKEQALYAIKSLNGKKTLE 252
            N   D I E+F+ +G V  V I     T   KG  +V+FS  E A  A+ +L G+    
Sbjct: 276 FNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYI-- 333

Query: 253 GCTRPVEVRFAEPK 266
              RPV + F+ P+
Sbjct: 334 -DNRPVRLDFSSPR 346

 Score = 43.5 bits (101), Expect = 1e-08
 Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 13/110 (11%)

Query: 354 SANMHNLSESSGPPGANLFI----FHVPNEWQQTDLIQAFSPFGELLSARIATEKNTGRN 409
           S+N    +E +  P A +F+    + + +EW    L + F   G ++ AR+  E+ T R+
Sbjct: 154 SSNKKQKNEETEEP-ATIFVGRLSWSIDDEW----LKKEFEHIGGVIGARVIYERGTDRS 208

Query: 410 RGFAFVSYDSLESAAAAISQMNG----FMALNKKLKVTVKKGEEDEMKKY 455
           RG+ +V +++   A  AI +M G       +N  +  +   G  D  KK+
Sbjct: 209 RGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKF 258

 Score = 42.7 bits (99), Expect = 2e-08
 Identities = 20/90 (22%), Positives = 44/90 (48%)

Query: 353 NSANMHNLSESSGPPGANLFIFHVPNEWQQTDLIQAFSPFGELLSARIATEKNTGRNRGF 412
           N+       ++   P   LF+ ++     +  + + F+  GE++S RI T   T + +GF
Sbjct: 251 NNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGF 310

Query: 413 AFVSYDSLESAAAAISQMNGFMALNKKLKV 442
            +V + ++E A  A+  + G    N+ +++
Sbjct: 311 GYVQFSNMEDAKKALDALQGEYIDNRPVRL 340

 Score = 32.3 bits (72), Expect = 3e-05
 Identities = 44/245 (17%), Positives = 96/245 (39%), Gaps = 48/245 (19%)

Query: 22  NQDKNENTSEVNDYSKEDIEGDENLKSSKGKQENNTKSSSDKDENTIDYGNHDFPCNPAP 81
           ++ ++ ++S  +D         ++   ++ K+E +  SSS   +++ D            
Sbjct: 51  SESESSSSSSSSDSESSSSSSSDSESEAETKKEESKDSSSSSSDSSSD------------ 98

Query: 82  PVPIKLFIGRVPKNIEEDQLRPIFEEYGIVNEVVIIRDKITNVHKSSAFVKMASISEADN 141
                       +  EE++     EE               +   SS+    +S S++++
Sbjct: 99  ------------EEEEEEKEETKKEE---------------SKESSSSDSSSSSSSDSES 131

Query: 142 AIRLLNNQKTLDAQLGSLQVKYASGELNKLGFPQNIESGVDQAKLFIGSLPKNITEDNIK 201
                N++K         + + +S +       Q  E   + A +F+G L  +I ++ +K
Sbjct: 132 EKEESNDKKRKSEDAEEEEDEESSNK------KQKNEETEEPATIFVGRLSWSIDDEWLK 185

Query: 202 EMFSPYGTVEEVFIMKDNSTGLGKGCSFVKFSYKEQALYAIKSLNGKKTLEGCTRPVEVR 261
           + F   G V    ++ +  T   +G  +V F  K  A  AI+ + GK+ ++G  RP+   
Sbjct: 186 KEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKE-IDG--RPINCD 242

Query: 262 FAEPK 266
            +  K
Sbjct: 243 MSTSK 247

 Score = 15.4 bits (28), Expect = 4.2
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query: 441 KVTVKKGEEDEMK 453
           K T  KG + E+K
Sbjct: 3   KTTKVKGNKKEVK 15

 Score = 15.4 bits (28), Expect = 4.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 422 SAAAAISQMNGFMALNKKLKVTVKKGEEDE 451
           S++++ S+     + +KK K    + EEDE
Sbjct: 123 SSSSSDSESEKEESNDKKRKSEDAEEEEDE 152
Lambda     K      H
   0.312    0.130    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 477
Number of extensions: 32
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 9
Length of query: 509
Length of database: 414
Length adjustment: 33
Effective length of query: 476
Effective length of database: 381
Effective search space:   181356
Effective search space used:   181356
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 25 (14.2 bits)
S2: 25 (14.2 bits)