Query= PF13_0315 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) RNA binding
protein, putative
(509 letters)
>YGR159C NSR1 SGDID:S000003391, Chr VII from 807661-806417, reverse
complement, Verified ORF, "Nucleolar protein that binds
nuclear localization sequences, required for pre-rRNA
processing and ribosome biogenesis"
Length = 414
Score = 73.6 bits (179), Expect = 1e-17
Identities = 64/254 (25%), Positives = 115/254 (45%), Gaps = 17/254 (6%)
Query: 23 QDKNENTSEVNDYSKEDIEGDENLKSSKG----KQENNTKS--SSDKDENTIDYGNHDFP 76
+++ E + SKE D + SS K+E+N K S D +E + ++
Sbjct: 100 EEEEEKEETKKEESKESSSSDSSSSSSSDSESEKEESNDKKRKSEDAEEEEDEESSNKKQ 159
Query: 77 CNPAPPVPIKLFIGRVPKNIEEDQLRPIFEEYGIVNEVVIIRDKITNVHKSSAFVKMASI 136
N P +F+GR+ +I+++ L+ FE G V +I ++ T+ + +V +
Sbjct: 160 KNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENK 219
Query: 137 SEADNAIRLLNNQ----KTLDAQLGSLQVKYASGELNKLGFPQNIESGVDQAKLFIGSLP 192
S A+ AI+ + + + ++ + + + + K G + S LF+G+L
Sbjct: 220 SYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDT----LFLGNLS 275
Query: 193 KNITEDNIKEMFSPYGTVEEVFIMKDNSTGLGKGCSFVKFSYKEQALYAIKSLNGKKTLE 252
N D I E+F+ +G V V I T KG +V+FS E A A+ +L G+
Sbjct: 276 FNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYI-- 333
Query: 253 GCTRPVEVRFAEPK 266
RPV + F+ P+
Sbjct: 334 -DNRPVRLDFSSPR 346
Score = 43.5 bits (101), Expect = 1e-08
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 354 SANMHNLSESSGPPGANLFI----FHVPNEWQQTDLIQAFSPFGELLSARIATEKNTGRN 409
S+N +E + P A +F+ + + +EW L + F G ++ AR+ E+ T R+
Sbjct: 154 SSNKKQKNEETEEP-ATIFVGRLSWSIDDEW----LKKEFEHIGGVIGARVIYERGTDRS 208
Query: 410 RGFAFVSYDSLESAAAAISQMNG----FMALNKKLKVTVKKGEEDEMKKY 455
RG+ +V +++ A AI +M G +N + + G D KK+
Sbjct: 209 RGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKF 258
Score = 42.7 bits (99), Expect = 2e-08
Identities = 20/90 (22%), Positives = 44/90 (48%)
Query: 353 NSANMHNLSESSGPPGANLFIFHVPNEWQQTDLIQAFSPFGELLSARIATEKNTGRNRGF 412
N+ ++ P LF+ ++ + + + F+ GE++S RI T T + +GF
Sbjct: 251 NNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGF 310
Query: 413 AFVSYDSLESAAAAISQMNGFMALNKKLKV 442
+V + ++E A A+ + G N+ +++
Sbjct: 311 GYVQFSNMEDAKKALDALQGEYIDNRPVRL 340
Score = 32.3 bits (72), Expect = 3e-05
Identities = 44/245 (17%), Positives = 96/245 (39%), Gaps = 48/245 (19%)
Query: 22 NQDKNENTSEVNDYSKEDIEGDENLKSSKGKQENNTKSSSDKDENTIDYGNHDFPCNPAP 81
++ ++ ++S +D ++ ++ K+E + SSS +++ D
Sbjct: 51 SESESSSSSSSSDSESSSSSSSDSESEAETKKEESKDSSSSSSDSSSD------------ 98
Query: 82 PVPIKLFIGRVPKNIEEDQLRPIFEEYGIVNEVVIIRDKITNVHKSSAFVKMASISEADN 141
+ EE++ EE + SS+ +S S++++
Sbjct: 99 ------------EEEEEEKEETKKEE---------------SKESSSSDSSSSSSSDSES 131
Query: 142 AIRLLNNQKTLDAQLGSLQVKYASGELNKLGFPQNIESGVDQAKLFIGSLPKNITEDNIK 201
N++K + + +S + Q E + A +F+G L +I ++ +K
Sbjct: 132 EKEESNDKKRKSEDAEEEEDEESSNK------KQKNEETEEPATIFVGRLSWSIDDEWLK 185
Query: 202 EMFSPYGTVEEVFIMKDNSTGLGKGCSFVKFSYKEQALYAIKSLNGKKTLEGCTRPVEVR 261
+ F G V ++ + T +G +V F K A AI+ + GK+ ++G RP+
Sbjct: 186 KEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKE-IDG--RPINCD 242
Query: 262 FAEPK 266
+ K
Sbjct: 243 MSTSK 247
Score = 15.4 bits (28), Expect = 4.2
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 441 KVTVKKGEEDEMK 453
K T KG + E+K
Sbjct: 3 KTTKVKGNKKEVK 15
Score = 15.4 bits (28), Expect = 4.2
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 422 SAAAAISQMNGFMALNKKLKVTVKKGEEDE 451
S++++ S+ + +KK K + EEDE
Sbjct: 123 SSSSSDSESEKEESNDKKRKSEDAEEEEDE 152
Lambda K H
0.312 0.130 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 477
Number of extensions: 32
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 9
Length of query: 509
Length of database: 414
Length adjustment: 33
Effective length of query: 476
Effective length of database: 381
Effective search space: 181356
Effective search space used: 181356
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 25 (14.2 bits)
S2: 25 (14.2 bits)