Query= PF13_0315 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) RNA binding
protein, putative
(509 letters)
>YOL123W HRP1 SGDID:S000005483, Chr XV from 87844-89448, Verified
ORF, "Subunit of cleavage factor I, a five-subunit
complex required for the cleavage and polyadenylation of
pre-mRNA 3' ends; RRM-containing heteronuclear RNA
binding protein and hnRNPA/B family member that binds to
poly (A) signal sequences"
Length = 534
Score = 72.8 bits (177), Expect = 3e-17
Identities = 60/279 (21%), Positives = 113/279 (40%), Gaps = 49/279 (17%)
Query: 22 NQDKNENTSEVNDYSKEDIEGDENLKSSKGKQENNTKSSSDKDENTID------------ 69
N + +S D + D EG ++ KQE+ T ++++ + ++
Sbjct: 66 NNSNQDTSSSKQDGTANDKEGSNEDTKNEKKQESATSANANANASSAGPSGLPWEQLQQT 125
Query: 70 YGNHDFPCNPAPPVP------------------IKLFIGRVPKNIEEDQLRPIFEEYGIV 111
P + +PP K+FIG + + ED LR F +YG V
Sbjct: 126 MSQFQQPSSQSPPQQQVTQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTV 185
Query: 112 NEVVIIRDKITNVHKSSAFVKMASISEADNAIRLLNNQKTLDAQLGSLQVKYASGELNKL 171
++ I++D T + F+ S D ++ Q LD ++ + E +K
Sbjct: 186 TDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK---TQHILDGKVIDPKRAIPRDEQDKT 242
Query: 172 GFPQNIESGVDQAKLFIGSLPKNITEDNIKEMFSPYGTVEEVFIMKDNSTGLGKGCSFVK 231
G K+F+G + ++ +E FS +GT+ + +M D TG +G FV
Sbjct: 243 G------------KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVT 290
Query: 232 FSYKEQALYAIKSLNGKKTLEGCTRPVEVRFAEPKSSKQ 270
+ + A+ + K ++ R +E++ AEP+ +Q
Sbjct: 291 YDSAD----AVDRVCQNKFIDFKDRKIEIKRAEPRHMQQ 325
Score = 48.9 bits (115), Expect = 4e-10
Identities = 26/93 (27%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 371 LFIFHVPNEWQQTDLIQAFSPFGELLSARIATEKNTGRNRGFAFVSYDSLESAAAAISQM 430
+F+ + + + + + FS +G ++ A++ +K+TG++RGF FV+YDS ++
Sbjct: 245 IFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVC--Q 302
Query: 431 NGFMALNKKLKVTVKKGEEDEMKKYVNQNGVNS 463
N F+ K K+ +K+ E M++ + NG N+
Sbjct: 303 NKFIDF-KDRKIEIKRAEPRHMQQKSSNNGGNN 334
Score = 32.7 bits (73), Expect = 3e-05
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 380 WQQTD--LIQAFSPFGELLSARIATEKNTGRNRGFAFVSYDSLESAAAAISQMNGFMALN 437
W T+ L + F +G + +I + TGR+RGF F+S++ S + +
Sbjct: 168 WDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKV 227
Query: 438 KKLKVTVKKGEEDEMKK 454
K + + E+D+ K
Sbjct: 228 IDPKRAIPRDEQDKTGK 244
Score = 19.6 bits (39), Expect = 0.29
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 12/57 (21%)
Query: 450 DEMKKYVNQN----GVNSFQQVPRVQKAIPAQPASMQPNLAYHQNPQAQNFFYSNSN 502
+E+KK QN G + Q+ +Q ++ +L NP + N +NSN
Sbjct: 21 EEVKKEEEQNKAGSGTSQLDQLAALQ--------ALSSSLNKLNNPNSNNSSSNNSN 69
Score = 17.7 bits (34), Expect = 1.1
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 21 YNQDKNEN---TSEVNDYSKEDIEGDENLKSSKGKQEN 55
YN D N + D + D + D N +S + N
Sbjct: 477 YNDDHNSGYGYNRDRGDRDRNDRDRDYNHRSGGNHRRN 514
Score = 17.3 bits (33), Expect = 1.4
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 50 KGKQENNTKSSSDKDENTIDYGNH 73
+G ++ N + D+D N GNH
Sbjct: 491 RGDRDRNDR---DRDYNHRSGGNH 511
Lambda K H
0.312 0.130 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 831
Number of extensions: 63
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 15
Length of query: 509
Length of database: 534
Length adjustment: 35
Effective length of query: 474
Effective length of database: 499
Effective search space: 236526
Effective search space used: 236526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 26 (14.6 bits)
S2: 26 (14.6 bits)