Query= PF13_0315 Pf Annotation|Plasmodium_falciparum_Sanger|(protein coding) RNA binding protein, putative (509 letters)
>YOL123W HRP1 SGDID:S000005483, Chr XV from 87844-89448, Verified
           ORF, "Subunit of cleavage factor I, a five-subunit
           complex required for the cleavage and polyadenylation of
           pre-mRNA 3' ends; RRM-containing heteronuclear RNA
           binding protein and hnRNPA/B family member that binds to
           poly (A) signal sequences"
          Length = 534

 Score = 72.8 bits (177), Expect = 3e-17
 Identities = 60/279 (21%), Positives = 113/279 (40%), Gaps = 49/279 (17%)

Query: 22  NQDKNENTSEVNDYSKEDIEGDENLKSSKGKQENNTKSSSDKDENTID------------ 69
           N    + +S   D +  D EG      ++ KQE+ T ++++ + ++              
Sbjct: 66  NNSNQDTSSSKQDGTANDKEGSNEDTKNEKKQESATSANANANASSAGPSGLPWEQLQQT 125

Query: 70  YGNHDFPCNPAPPVP------------------IKLFIGRVPKNIEEDQLRPIFEEYGIV 111
                 P + +PP                     K+FIG +  +  ED LR  F +YG V
Sbjct: 126 MSQFQQPSSQSPPQQQVTQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTV 185

Query: 112 NEVVIIRDKITNVHKSSAFVKMASISEADNAIRLLNNQKTLDAQLGSLQVKYASGELNKL 171
            ++ I++D  T   +   F+     S  D  ++    Q  LD ++   +      E +K 
Sbjct: 186 TDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK---TQHILDGKVIDPKRAIPRDEQDKT 242

Query: 172 GFPQNIESGVDQAKLFIGSLPKNITEDNIKEMFSPYGTVEEVFIMKDNSTGLGKGCSFVK 231
           G            K+F+G +  ++     +E FS +GT+ +  +M D  TG  +G  FV 
Sbjct: 243 G------------KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVT 290

Query: 232 FSYKEQALYAIKSLNGKKTLEGCTRPVEVRFAEPKSSKQ 270
           +   +    A+  +   K ++   R +E++ AEP+  +Q
Sbjct: 291 YDSAD----AVDRVCQNKFIDFKDRKIEIKRAEPRHMQQ 325

 Score = 48.9 bits (115), Expect = 4e-10
 Identities = 26/93 (27%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 371 LFIFHVPNEWQQTDLIQAFSPFGELLSARIATEKNTGRNRGFAFVSYDSLESAAAAISQM 430
           +F+  +  + +  +  + FS +G ++ A++  +K+TG++RGF FV+YDS ++        
Sbjct: 245 IFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVC--Q 302

Query: 431 NGFMALNKKLKVTVKKGEEDEMKKYVNQNGVNS 463
           N F+   K  K+ +K+ E   M++  + NG N+
Sbjct: 303 NKFIDF-KDRKIEIKRAEPRHMQQKSSNNGGNN 334

 Score = 32.7 bits (73), Expect = 3e-05
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 380 WQQTD--LIQAFSPFGELLSARIATEKNTGRNRGFAFVSYDSLESAAAAISQMNGFMALN 437
           W  T+  L + F  +G +   +I  +  TGR+RGF F+S++   S    +   +      
Sbjct: 168 WDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKV 227

Query: 438 KKLKVTVKKGEEDEMKK 454
              K  + + E+D+  K
Sbjct: 228 IDPKRAIPRDEQDKTGK 244

 Score = 19.6 bits (39), Expect = 0.29
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 12/57 (21%)

Query: 450 DEMKKYVNQN----GVNSFQQVPRVQKAIPAQPASMQPNLAYHQNPQAQNFFYSNSN 502
           +E+KK   QN    G +   Q+  +Q        ++  +L    NP + N   +NSN
Sbjct: 21  EEVKKEEEQNKAGSGTSQLDQLAALQ--------ALSSSLNKLNNPNSNNSSSNNSN 69

 Score = 17.7 bits (34), Expect = 1.1
 Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 21  YNQDKNEN---TSEVNDYSKEDIEGDENLKSSKGKQEN 55
           YN D N       +  D  + D + D N +S    + N
Sbjct: 477 YNDDHNSGYGYNRDRGDRDRNDRDRDYNHRSGGNHRRN 514

 Score = 17.3 bits (33), Expect = 1.4
 Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 3/24 (12%)

Query: 50  KGKQENNTKSSSDKDENTIDYGNH 73
           +G ++ N +   D+D N    GNH
Sbjct: 491 RGDRDRNDR---DRDYNHRSGGNH 511
Lambda     K      H
   0.312    0.130    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 831
Number of extensions: 63
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 15
Length of query: 509
Length of database: 534
Length adjustment: 35
Effective length of query: 474
Effective length of database: 499
Effective search space:   236526
Effective search space used:   236526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 26 (14.6 bits)
S2: 26 (14.6 bits)