>FBgn0033571 type=protein; loc=2R:complement(6785837..6786469);
           ID=FBpp0087332; name=Rpb5-PA;
           parent=FBgn0033571,FBtr0088237;
           dbxref=FlyBase:FBpp0087332,
           FlyBase_Annotation_IDs:CG11979-PA,GB_protein:AAF58728.1,
           GB_protein:AAF58728;
           MD5=a89c709b32d139e68547151f7d5b87e2; release=r5.1;
           species=Dmel; length=210;
          Length = 210

 Score =  193 bits (490), Expect = 2e-54
 Identities = 96/202 (47%), Positives = 140/202 (69%), Gaps = 5/202 (2%)

Query: 7   RFYKCRKTCCEMLEDRGYIMTPREKLENFSTFKEMFEDNDRQ----RSKMGISTTHKNDS 62
           + ++ RKT  ++  DRGY++T  E  +    FKEMF D   +    RS + +   H +D 
Sbjct: 9   KLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVAHNDDP 68

Query: 63  NNRIIVYFADEVKKTGVKPLRELTERMEEKSIQRAILVTQNILTPFARDAIKEAAPRHII 122
            +++ V+F +E  K G+K ++    RM+E++I RAI+V Q  +TP A+ ++ + AP++I+
Sbjct: 69  TDQMFVFFPEE-PKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYIL 127

Query: 123 ENFLDTELLVNITKHELVPRHIPLTSDEKKNLLQRYKIMENKLPRIQDVDPVCRYFGLSK 182
           E FL++ELL+NIT+HELVP H+ +T +EK+ LL RYK+ EN L RIQ  DPV RYFGL +
Sbjct: 128 EQFLESELLINITEHELVPEHVVMTVEEKQELLSRYKLKENMLMRIQAGDPVARYFGLKR 187

Query: 183 GQVVKIIRPSETAGRYVTYRLV 204
           GQVVKIIR SETAGRY++YRLV
Sbjct: 188 GQVVKIIRSSETAGRYISYRLV 209

 Score = 15.8 bits (29), Expect = 0.62
 Identities = 4/11 (36%), Positives = 8/11 (72%)

Query: 3   DPVTRFYKCRK 13
           DPV R++  ++
Sbjct: 177 DPVARYFGLKR 187

Lambda     K      H
   0.321    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 162
Number of extensions: 10
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 205
Length of database: 210
Length adjustment: 21
Effective length of query: 184
Effective length of database: 189
Effective search space:    34776
Effective search space used:    34776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 19 (11.7 bits)
S2: 19 (11.9 bits)