>YBR154C RPB5 SGDID:S000000358, Chr II from 549003-548356, reverse
           complement, Verified ORF, "RNA polymerase subunit ABC27,
           common to RNA polymerases I, II, and III; contacts DNA
           and affects transactivation"
          Length = 215

 Score =  149 bits (376), Expect = 4e-41
 Identities = 87/210 (41%), Positives = 123/210 (58%), Gaps = 10/210 (4%)

Query: 2   EDPVTRFYKCRKTCCEMLEDRGYIMTPREKLENFSTFKEMFEDN--DRQRSKMGISTTHK 59
           E  ++R ++  +T  EM++DRGY +T  E       FK  + D+    QR  M       
Sbjct: 6   ERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPT 65

Query: 60  NDSNNR------IIVYFADEVKKTGVKPLRELTERMEEKSIQRAILVTQNILTPFARDAI 113
            +S ++      + V F DE    GVK ++     ++EK+ Q  I V QN +TP A   +
Sbjct: 66  EESISKFPDMGSLWVEFCDE-PSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLV 124

Query: 114 KEAAPRHIIENFLDTELLVNITKHELVPRHIPLTSDEKKNLLQRYKIMENKLPRIQDVDP 173
               P   IE F +  L+VNIT HELVP+HI L+SDEK+ LL+RY++ E++LPRIQ  DP
Sbjct: 125 PSIPPA-TIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQRADP 183

Query: 174 VCRYFGLSKGQVVKIIRPSETAGRYVTYRL 203
           V  Y GL +G+VVKIIR SET+GRY +YR+
Sbjct: 184 VALYLGLKRGEVVKIIRKSETSGRYASYRI 213

Lambda     K      H
   0.321    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 149
Number of extensions: 6
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 215
Length adjustment: 21
Effective length of query: 184
Effective length of database: 194
Effective search space:    35696
Effective search space used:    35696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 19 (11.7 bits)
S2: 19 (11.9 bits)