Query= PF13_0349 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) nucleoside
diphosphate kinase b; putative
(149 letters)
>YKL067W YNK1 SGDID:S000001550, Chr XI from 314456-314917, Verified
ORF, "Nucleoside diphosphate kinase, catalyzes the
transfer of gamma phosphates from nucleoside
triphosphates, usually ATP, to nucleoside diphosphates
by a mechanism that involves formation of an
autophosphorylated enzyme intermediate"
Length = 153
Score = 185 bits (469), Expect = 3e-52
Identities = 81/146 (55%), Positives = 113/146 (77%)
Query: 2 EKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNL 61
E++FI +KPDGVQRGLV I+ RFEKKGYKL+AIK++ +++L++HY E +PFF +
Sbjct: 6 ERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKM 65
Query: 62 VAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSDSVA 121
V+++ GP++A VWEG D+V+QGR ++G TNPL S GTIRGDF +++ +NV HGSDSV
Sbjct: 66 VSFMKSGPILATVWEGKDVVRQGRTILGATNPLGSAPGTIRGDFGIDLGRNVCHGSDSVD 125
Query: 122 SANKEINIWFKAEELTQWKHHMKEWI 147
SA +EIN+WFK EEL W+ + +WI
Sbjct: 126 SAEREINLWFKKEELVDWESNQAKWI 151
Lambda K H
0.318 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 111
Number of extensions: 5
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 153
Length adjustment: 16
Effective length of query: 133
Effective length of database: 137
Effective search space: 18221
Effective search space used: 18221
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 17 (10.7 bits)
S2: 17 (11.2 bits)