Query= PF14_0025 Pf Annotation|Plasmodium_falciparum_TIGR|(protein coding) proteosome subunit, putative (666 letters)
>YDL097C RPN6 SGDID:S000002255, Chr IV from 286695-285391, reverse
           complement, Verified ORF, "Essential, non-ATPase
           regulatory subunit of the 26S proteasome lid required
           for the assembly and activity of the 26S proteasome; the
           human homolog (S9 protein) partially rescues Rpn6p
           depletion"
          Length = 434

 Score = 97.1 bits (240), Expect = 2e-24
 Identities = 53/171 (30%), Positives = 94/171 (54%)

Query: 90  YINKKEIDKLIEFTTSNENYFNILPQAKTAKLIRNIVEKISKKIRNISTLYIIFKKYMNW 149
           Y+     DKL EF   +  Y     ++KT K+++ ++EK  +   ++     + +K + +
Sbjct: 65  YVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEF 124

Query: 150 AYEKKRNFLRCRIEVXXXXXXXXXXXXXTALSLIDRLLKEVKKVDDKTLLLELYIVQTKI 209
           A  +KR FL+  + +              +L+LI+ LL+E KK+DDK  L++++++++K+
Sbjct: 125 AKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKV 184

Query: 210 YMLLKNSTKMKASLTFAKXXXXXXXXXXXXXSEIDLLSGILFIYEKDYKSA 260
           Y  L+N  K KASLT A+             +E+DL+SGIL   +KDYK+A
Sbjct: 185 YHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTA 235

 Score = 74.7 bits (182), Expect = 8e-18
 Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 1/172 (0%)

Query: 493 LKYMLLCKVLEENNRKEINNILCENNKLNYVSHKEIQILLDISKSYENRSLDIFEKIIKN 552
           LKYMLL K++  N   ++ NIL           + I  +  ++++Y NRSL  F   +K 
Sbjct: 262 LKYMLLSKIML-NLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTALKQ 320

Query: 553 SLFLINIDKVXXXXXXXXXXXXXXXXXXXXXXAYSCIDLHYIGQKLNLDINKIISKLSEM 612
               +  D++                       + C+++ +I + + LD  ++  KLS+M
Sbjct: 321 YEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGKLSQM 380

Query: 613 ILDKKLNGTLDQNVGILILYDDMPETKMYQNVLDIINNLTESVDILYEKAQL 664
           ILDK   G LDQ  G L +Y+   +   Y + L+++  L + VD L+EKA +
Sbjct: 381 ILDKIFYGVLDQGNGWLYVYETPNQDATYDSALELVGQLNKVVDQLFEKASV 432

 Score = 18.9 bits (37), Expect = 0.53
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 637 ETKMYQNVLDIINNLTESVDILYEKAQL 664
           + K Y++ L +IN+L      L +K  L
Sbjct: 147 QKKQYKDSLALINDLLREFKKLDDKPSL 174

 Score = 16.9 bits (32), Expect = 2.0
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 66  FEKRVTNEKVMQINDKLIYLLCDYYINKKEIDKLIEFTTSNENYFNILPQAKTAKLIRNI 125
           F KR   EK + +   L   L   +  KK+    +         F  L    +   +  +
Sbjct: 124 FAKR---EKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLL 180

Query: 126 VEKISKKIRNIS 137
             K+  K+RN++
Sbjct: 181 ESKVYHKLRNLA 192

 Score = 15.0 bits (27), Expect = 7.6
 Identities = 9/42 (21%), Positives = 17/42 (40%)

Query: 86  LCDYYINKKEIDKLIEFTTSNENYFNILPQAKTAKLIRNIVE 127
           L D+    K+ +K +       ++FN L        +  I+E
Sbjct: 311 LLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIE 352
Lambda     K      H
   0.318    0.137    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 639
Number of extensions: 26
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 5
Length of query: 666
Length of database: 434
Length adjustment: 35
Effective length of query: 631
Effective length of database: 399
Effective search space:   251769
Effective search space used:   251769
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 26 (14.8 bits)
S2: 26 (14.6 bits)