Query= PF14_0025 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) proteosome
subunit, putative
(666 letters)
>YDL097C RPN6 SGDID:S000002255, Chr IV from 286695-285391, reverse
complement, Verified ORF, "Essential, non-ATPase
regulatory subunit of the 26S proteasome lid required
for the assembly and activity of the 26S proteasome; the
human homolog (S9 protein) partially rescues Rpn6p
depletion"
Length = 434
Score = 97.1 bits (240), Expect = 2e-24
Identities = 53/171 (30%), Positives = 94/171 (54%)
Query: 90 YINKKEIDKLIEFTTSNENYFNILPQAKTAKLIRNIVEKISKKIRNISTLYIIFKKYMNW 149
Y+ DKL EF + Y ++KT K+++ ++EK + ++ + +K + +
Sbjct: 65 YVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEF 124
Query: 150 AYEKKRNFLRCRIEVXXXXXXXXXXXXXTALSLIDRLLKEVKKVDDKTLLLELYIVQTKI 209
A +KR FL+ + + +L+LI+ LL+E KK+DDK L++++++++K+
Sbjct: 125 AKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKV 184
Query: 210 YMLLKNSTKMKASLTFAKXXXXXXXXXXXXXSEIDLLSGILFIYEKDYKSA 260
Y L+N K KASLT A+ +E+DL+SGIL +KDYK+A
Sbjct: 185 YHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTA 235
Score = 74.7 bits (182), Expect = 8e-18
Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 1/172 (0%)
Query: 493 LKYMLLCKVLEENNRKEINNILCENNKLNYVSHKEIQILLDISKSYENRSLDIFEKIIKN 552
LKYMLL K++ N ++ NIL + I + ++++Y NRSL F +K
Sbjct: 262 LKYMLLSKIML-NLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTALKQ 320
Query: 553 SLFLINIDKVXXXXXXXXXXXXXXXXXXXXXXAYSCIDLHYIGQKLNLDINKIISKLSEM 612
+ D++ + C+++ +I + + LD ++ KLS+M
Sbjct: 321 YEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGKLSQM 380
Query: 613 ILDKKLNGTLDQNVGILILYDDMPETKMYQNVLDIINNLTESVDILYEKAQL 664
ILDK G LDQ G L +Y+ + Y + L+++ L + VD L+EKA +
Sbjct: 381 ILDKIFYGVLDQGNGWLYVYETPNQDATYDSALELVGQLNKVVDQLFEKASV 432
Score = 18.9 bits (37), Expect = 0.53
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 637 ETKMYQNVLDIINNLTESVDILYEKAQL 664
+ K Y++ L +IN+L L +K L
Sbjct: 147 QKKQYKDSLALINDLLREFKKLDDKPSL 174
Score = 16.9 bits (32), Expect = 2.0
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 66 FEKRVTNEKVMQINDKLIYLLCDYYINKKEIDKLIEFTTSNENYFNILPQAKTAKLIRNI 125
F KR EK + + L L + KK+ + F L + + +
Sbjct: 124 FAKR---EKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLL 180
Query: 126 VEKISKKIRNIS 137
K+ K+RN++
Sbjct: 181 ESKVYHKLRNLA 192
Score = 15.0 bits (27), Expect = 7.6
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 86 LCDYYINKKEIDKLIEFTTSNENYFNILPQAKTAKLIRNIVE 127
L D+ K+ +K + ++FN L + I+E
Sbjct: 311 LLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIE 352
Lambda K H
0.318 0.137 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 639
Number of extensions: 26
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 5
Length of query: 666
Length of database: 434
Length adjustment: 35
Effective length of query: 631
Effective length of database: 399
Effective search space: 251769
Effective search space used: 251769
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 26 (14.8 bits)
S2: 26 (14.6 bits)