>YER165W PAB1 SGDID:S000000967, Chr V from 510368-512101, Verified
           ORF, "Poly(A) binding protein, part of the 3'-end
           RNA-processing complex, mediates interactions between
           the 5' cap structure and the 3' mRNA poly(A) tail,
           involved in control of poly(A) tail length, interacts
           with translation factor eIF-4G"
          Length = 577

 Score = 47.8 bits (112), Expect = 1e-09
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 164 KEKIANLYLGNLSPEVTEEYLCQKFGKFGKVNSVKIMYPRKDEDKKKARISGFVCFENIE 223
           K    NLY+ N++ E T+E   + F KFG + S  +    KD D  K +  GFV +E  E
Sbjct: 215 KAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASL---EKDAD-GKLKGFGFVNYEKHE 270

Query: 224 DAENAKDALDGVEMCGNIIRIG 245
           DA  A +AL+  E+ G  + +G
Sbjct: 271 DAVKAVEALNDSELNGEKLYVG 292

 Score = 43.9 bits (102), Expect = 2e-08
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 168 ANLYLGNLSPEVTEEYLCQKFGKFGKVNSVKIMYPRKDEDKKKARISGFVCFENIEDAEN 227
           A+LY+G+L P V+E +L   F   G V+S+++    +D   K +    +V F + E    
Sbjct: 38  ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVC---RDAITKTSLGYAYVNFNDHEAGRK 94

Query: 228 AKDALDGVEMCGNIIRIGWSKAIP 251
           A + L+   + G + RI WS+  P
Sbjct: 95  AIEQLNYTPIKGRLCRIMWSQRDP 118

 Score = 43.1 bits (100), Expect = 3e-08
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 163 RKEKIANLYLGNLSPEVTEEYLCQKFGKFGKVNSVKIMYPRKDEDKKKARISGFVCFENI 222
           RK+   N+++ NL P++  + L   F  FG + S KI      ++  K++  GFV FE  
Sbjct: 121 RKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKI----ATDENGKSKGFGFVHFEEE 176

Query: 223 EDAENAKDALDGVEMCGNIIRI 244
             A+ A DAL+G+ + G  I +
Sbjct: 177 GAAKEAIDALNGMLLNGQEIYV 198

 Score = 41.6 bits (96), Expect = 1e-07
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 9/71 (12%)

Query: 163 RKEKIA-----NLYLGNLSPEVTEEYLCQKFGKFGKVNSVKIMYPRKDEDKKKARISGFV 217
           R EK+A     NL++ NL   V +E L ++F  +G + S K+M  R +  K K    GFV
Sbjct: 312 RLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVM--RTENGKSKG--FGFV 367

Query: 218 CFENIEDAENA 228
           CF   E+A  A
Sbjct: 368 CFSTPEEATKA 378

 Score = 16.5 bits (31), Expect = 3.5
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 495 KKVDSKIKGKLFID 508
           K  D K+KG  F++
Sbjct: 252 KDADGKLKGFGFVN 265

 Score = 15.8 bits (29), Expect = 5.9
 Identities = 5/18 (27%), Positives = 9/18 (50%)

Query: 580 YMYFKKNDDEINKLCLQR 597
           Y Y   ND E  +  +++
Sbjct: 81  YAYVNFNDHEAGRKAIEQ 98

Lambda     K      H
   0.319    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 832
Number of extensions: 42
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 6
Length of query: 655
Length of database: 577
Length adjustment: 37
Effective length of query: 618
Effective length of database: 540
Effective search space:   333720
Effective search space used:   333720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.8 bits)
S2: 28 (15.4 bits)