>YNL016W PUB1 SGDID:S000004961, Chr XIV from 602908-604269, Verified
           ORF, "Poly(A)+ RNA-binding protein, abundant
           mRNP-component protein hypothesized to bind a pool of
           non-translatable mRNAs; not reported to associate with
           polyribosomes"
          Length = 453

 Score = 49.7 bits (117), Expect = 3e-10
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 169 NLYLGNLSPEVTEEYLCQKFGKFGKVNSVKIMYPRKDEDKKKARISGFVCFENIEDAENA 228
           NL++G+L+  V +E L   F  F    S  +M+   D     +R  GFV F + +DA+NA
Sbjct: 163 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMW---DMQTGSSRGYGFVSFTSQDDAQNA 219

Query: 229 KDALDGVEMCGNIIRIGWSKAIPKFGYNTKNEISNY 264
            D++ G ++ G  +RI W+        N   +  NY
Sbjct: 220 MDSMQGQDLNGRPLRINWAAKRDNNNNNNYQQRRNY 255

 Score = 47.0 bits (110), Expect = 2e-09
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 4/78 (5%)

Query: 170 LYLGNLSPEVTEEYLCQKFGKFGKVNSVKIMYPRKDEDKKKARISGFVCFENIEDAENAK 229
           LY+GNL   +TE+ L Q F   G + ++KIM  + +++   A    FV +    DA  A 
Sbjct: 77  LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYA----FVEYHQSHDANIAL 132

Query: 230 DALDGVEMCGNIIRIGWS 247
             L+G ++  NI++I W+
Sbjct: 133 QTLNGKQIENNIVKINWA 150

 Score = 29.6 bits (65), Expect = 3e-04
 Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 166 KIANLYLGNLSPEVTEEYLCQKFGKFGKVNSVKIMYPRKDEDKKKARISGFVCFENIEDA 225
           ++   Y+GN+    TE  L   F  FG +   K  YP K           F+ ++  E A
Sbjct: 339 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFK-HYPEKG--------CCFIKYDTHEQA 389

Query: 226 ENAKDALDGVEMCGNIIRIGWSKAIPKF 253
                AL      G  +R GW K    F
Sbjct: 390 AVCIVALANFPFQGRNLRTGWGKERSNF 417

 Score = 17.7 bits (34), Expect = 1.2
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 623 NNNKIFLNSYVFQGDNNKNV 642
           NNN+     Y    +NN N+
Sbjct: 257 NNNRGGFRQYNSNNNNNMNM 276

 Score = 15.0 bits (27), Expect = 7.9
 Identities = 5/5 (100%), Positives = 5/5 (100%)

Query: 638 NNKNV 642
           NNKNV
Sbjct: 111 NNKNV 115

Lambda     K      H
   0.319    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 682
Number of extensions: 36
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 5
Length of query: 655
Length of database: 453
Length adjustment: 35
Effective length of query: 620
Effective length of database: 418
Effective search space:   259160
Effective search space used:   259160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 27 (15.3 bits)
S2: 27 (15.0 bits)