>YMR049C ERB1 SGDID:S000004652, Chr XIII from 370516-368093, reverse
           complement, Verified ORF, "Protein required for
           maturation of the 25S and 5.8S ribosomal RNAs;
           constituent of 66S pre-ribosomal particles; homologous
           to mammalian Bop1"
          Length = 807

 Score =  109 bits (273), Expect = 6e-28
 Identities = 83/282 (29%), Positives = 137/282 (48%), Gaps = 20/282 (7%)

Query: 155 DNSNIYINEEI------DESDDEYNINTLGNFDLKHYEDFDIIGYDIEGKKIYKSDE-NL 207
           D S+  I  EI      D+SD E   NT+GN  L  Y++   IGYDI GK+I +  + + 
Sbjct: 130 DGSDRIIKPEINPVYDSDDSDAETQ-NTIGNIPLSAYDEMPHIGYDINGKRIMRPAKGSA 188

Query: 208 IDDFLNSQRDENHWRKIKDVKNNRVVQLTDADLQIIKSIRENKVAT-ILNDANYIYENDK 266
           +D  L+S      W  + D  +   + LT  +L++I  I+ N+     +N    + +   
Sbjct: 189 LDQLLDSIELPEGWTGLLDKNSGSSLNLTKEELELISKIQRNEQTDDSINPYEPLIDWFT 248

Query: 267 EEYKLYPSGIINQKKNEENGSVHERKKISKIMNYLRNKEKYP-ERYKDKKEND--EDYIY 323
              ++ P   + + K     S +E K++ KI+  +R     P ++ K+ KE +  E+Y Y
Sbjct: 249 RHEEVMPLTAVPEPKRRFVPSKNEAKRVMKIVRAIREGRIIPPKKLKEMKEKEKIENYQY 308

Query: 324 DLWNN--RIYDEFNNINEISLPHILPGHKYSYNPPPELMLSSSEKRKL----LKNNKDAF 377
           DLW +     D   ++    LP   P ++ SYNPP E +LS  EK           +  F
Sbjct: 309 DLWGDSTETNDHVMHLRAPKLPP--PTNEESYNPPEEYLLSPEEKEAWENTEYSERERNF 366

Query: 378 IPQNFKNIRNIEYYKKTYFDLYQRCLDIYLCSRTLKNVLHIN 419
           IPQ +  +R +  Y ++  + ++R LD+YL  R  KN L+I+
Sbjct: 367 IPQKYSALRKVPGYGESIRERFERSLDLYLAPRVRKNKLNID 408

 Score =  101 bits (252), Expect = 2e-25
 Identities = 61/227 (26%), Positives = 110/227 (48%), Gaps = 13/227 (5%)

Query: 745 CVAIKHEGEIKDISWNNNGNYLSVTCMRNIGQYNDCYLHHMXXXXXXXXXXXXXXXRGNI 804
           C+ I  +  +K +SW+  G+Y  VT   + G  N   L H                +G I
Sbjct: 588 CITISCKKTVKKLSWHRKGDYF-VTVQPDSG--NTSVLIHQVSKHLTQSPFKKS--KGII 642

Query: 805 ISTMFFPRSPYFMVAFENNITIYNLKATNKKERIFKKLRGVQHITSMDVHTNESYILVSD 864
           +   F P  P   V  +  + IY+L   +++  + K L G + ++ +D+H     ++ S 
Sbjct: 643 MDAKFHPFKPQLFVCSQRYVRIYDL---SQQILVKKLLPGARWLSKIDIHPRGDNLIASS 699

Query: 865 SLGNVFIFDLDLSCNPYKKFHLQECPLKKVQFHKSYNLFYSLGDNGKINLFYSKFFQDYI 924
               V   DLDL+  PYK     E  ++ V FHK   LF S  D+G I++F++  + D +
Sbjct: 700 FDKRVLWHDLDLASTPYKTLRYHEKAVRSVNFHKKLPLFSSAADDGTIHVFHATVYDDMM 759

Query: 925 TNPVLLPIKEIS-----NESKIVDMVWSEKKPWFFTYTQNNFSVLYT 966
            NP+++P+K+++     N   ++D +W  ++ W F+   +N + L+T
Sbjct: 760 KNPMIVPLKKLTGHKVINSLGVLDAIWHPREAWLFSAGADNTARLWT 806

 Score = 21.9 bits (45), Expect = 0.17
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 3/107 (2%)

Query: 164 EIDESDDEYN--INTLGNFDLKHYEDFDIIGYDIEGKKIYKSDENLIDDFLNSQRDENHW 221
           E DE DDEY   +    +   K  +D      D E  K+   +E   ++  +S    +  
Sbjct: 45  ESDEDDDEYESAVEEKESSSDKEAQDDSDDDSDAELNKLLAEEEGDGEEDYDSSEFSDDT 104

Query: 222 RKIKDVKNNRVVQLTDADLQIIKSIRENKVATILNDANYIYENDKEE 268
             + D  +   +Q T  D  I     +     I  + N +Y++D  +
Sbjct: 105 TSLTDRLSGVKLQ-TIVDPNIYSKYADGSDRIIKPEINPVYDSDDSD 150

 Score = 18.9 bits (37), Expect = 1.5
 Identities = 6/21 (28%), Positives = 16/21 (76%)

Query: 588 KNGEGNINKANKSKNDALEEE 608
           +NG+G+ +  N+S  +A++++
Sbjct: 551 ENGDGDEDGENESAKNAVKKQ 571

 Score = 18.5 bits (36), Expect = 1.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 152 GAGDNSNIYINEEIDESDDEYN 173
           G    SN+ +NE  D  +D  N
Sbjct: 540 GTVKKSNLEVNENGDGDEDGEN 561

 Score = 18.1 bits (35), Expect = 2.5
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 190 IIGYDIEGKKIYKSDENLIDDFLNSQRDEN 219
           I GYDIE     K ++    D   + +  N
Sbjct: 517 IFGYDIENNGKTKIEDGFGYDTFGTVKKSN 546

 Score = 17.7 bits (34), Expect = 3.3
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 9/48 (18%)

Query: 571 VDNIYDTTNSDVKRKKPKNGEGNINKANKSKNDALEEESILEGDINDK 618
           ++ +YD+ +SD    + +N  GNI  +      A +E   +  DIN K
Sbjct: 140 INPVYDSDDSDA---ETQNTIGNIPLS------AYDEMPHIGYDINGK 178

Lambda     K      H
   0.316    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1876
Number of extensions: 113
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 966
Length of database: 807
Length adjustment: 43
Effective length of query: 923
Effective length of database: 764
Effective search space:   705172
Effective search space used:   705172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 30 (16.6 bits)
S2: 30 (16.2 bits)