Query= PF14_0068 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) fibrillarin,
putative
(318 letters)
>YDL014W NOP1 SGDID:S000002172, Chr IV from 427361-428344, Verified
ORF, "Nucleolar protein, component of the small subunit
processome complex, which is required for processing of
pre-18S rRNA; has similarity to mammalian fibrillarin"
Length = 327
Score = 277 bits (709), Expect = 2e-79
Identities = 140/236 (59%), Positives = 166/236 (70%), Gaps = 7/236 (2%)
Query: 89 KVIVVPHRFPGVYLLKGKSDILVTKNLVPGESVYGEKRYEVMTEDE-------KIEYRVW 141
KV++ PHR GVY+ +GK D+LVTKN+ PGESVYGEKR V + K+EYRVW
Sbjct: 85 KVVIEPHRHAGVYIARGKEDLLVTKNMAPGESVYGEKRISVEEPSKEDGVPPTKVEYRVW 144
Query: 142 NPFRSKLGACLMGGVGNMPIKPGSKVLYLGAANGTSVSHVSDMVGDEGVVYAVEFSHRSG 201
NPFRSKL A +MGG+ + I PG KVLYLGAA+GTSVSHVSD+VG EGVVYAVEFSHR G
Sbjct: 145 NPFRSKLAAGIMGGLDELFIAPGKKVLYLGAASGTSVSHVSDVVGPEGVVYAVEFSHRPG 204
Query: 202 RDLTNMSKKRSNIVPIVEDARQPTKYRMLXXXXXXXXXXXXQPDQARIVAMNAHMFLKTG 261
R+L +M+KKR NI+PI+EDAR P KYRML QPDQARI+A+N+HMFLK
Sbjct: 205 RELISMAKKRPNIIPIIEDARHPQKYRMLIGMVDCVFADVAQPDQARIIALNSHMFLKDQ 264
Query: 262 GWFIISIKANCVDSTAKPEVVFASEMXXXXXXXXXXXXXLTLEPFHRHHAIVLGMY 317
G +ISIKANC+DST E VFA E+ LTLEP+ R H IV+G Y
Sbjct: 265 GGVVISIKANCIDSTVDAETVFAREVQKLREERIKPLEQLTLEPYERDHCIVVGRY 320
Lambda K H
0.319 0.135 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 333
Number of extensions: 8
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 327
Length adjustment: 28
Effective length of query: 290
Effective length of database: 299
Effective search space: 86710
Effective search space used: 86710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 22 (13.0 bits)
S2: 22 (13.1 bits)