Query= PF14_0083 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) ribosomal
protein S8e, putative
(218 letters)
>YBL072C RPS8A SGDID:S000000168, Chr II from 89123-88521, reverse
complement, Verified ORF, "Protein component of the
small (40S) ribosomal subunit; identical to Rps8Ap and
has similarity to rat S8 ribosomal protein"
Length = 200
Score = 179 bits (455), Expect = 3e-50
Identities = 98/219 (44%), Positives = 127/219 (57%), Gaps = 22/219 (10%)
Query: 1 MGISRDGRHKLRLTGGXXXXXXXXXXYELGRPPSNTKLGSRQVHVVRGRGRNYKYRAIKL 60
MGISRD RHK TG +ELGR P+NTK+G++++H VR RG N KYRA+++
Sbjct: 1 MGISRDSRHKRSATGAKRAQFRKKRKFELGRQPANTKIGAKRIHSVRTRGGNKKYRALRI 60
Query: 61 DSGSFSWPTFGISKNTRIIDVVYNASNNELVRTKTLVKNCIVVIDSHPFTTWYENTFGTT 120
++G+FSW + GISK TRI VVY+ SNNELVRT TL K IV ID+ PF W+E +G T
Sbjct: 61 ETGNFSWASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWFEAHYGQT 120
Query: 121 LGXXXXXXXXXXXXXXXXXXXXXXXXXXXDETTKTYGVIKK---IGKSKNIDPLLLEQFK 177
LG + K+ +K S I+ + QF
Sbjct: 121 LG-------------------KKKNVKEEETVAKSKNAERKWAARAASAKIESSVESQFS 161
Query: 178 QGRVLACISSRPGQCGKADGYIIEGDELLFYKRKMDKKK 216
GR+ ACISSRPGQ G+ DGYI+EG+EL FY R++ KK
Sbjct: 162 AGRLYACISSRPGQSGRCDGYILEGEELAFYLRRLTAKK 200
Lambda K H
0.318 0.138 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 134
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 3
Length of query: 218
Length of database: 200
Length adjustment: 21
Effective length of query: 197
Effective length of database: 179
Effective search space: 35263
Effective search space used: 35263
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 19 (11.6 bits)
S2: 19 (11.9 bits)