Query= PF14_0086 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) hypothetical
protein
(340 letters)
>YML080W DUS1 SGDID:S000004545, Chr XIII from 108806-110077,
Verified ORF, "Dihydrouridine synthase, member of a
widespread family of conserved proteins including Smm1p,
Dus3p, and Dus4p; modifies pre-tRNA(Phe) at U17"
Length = 423
Score = 214 bits (545), Expect = 3e-60
Identities = 118/300 (39%), Positives = 180/300 (60%), Gaps = 17/300 (5%)
Query: 17 KSFWESLGKPKYISAPMVDLSELPFRLLCRKYNCDLTFTPMLHSKNFVEHEKYRKGYFKS 76
+ ++ +G+P I APMVD SEL +R+L R+Y L +TPMLH+K F +KYR+ + S
Sbjct: 20 RQLFDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSS 79
Query: 77 CD---MDKPVIAQFCGNDSKILLEAINFIKDDVNAVDINLGCPQQIAKKGNYGAFLLHKH 133
D +D+P++ QFC ND + LL A ++D +AVD+NLGCPQ IAKKG+YG+FL+ +
Sbjct: 80 LDGSSVDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEW 139
Query: 134 DEVVNLISDITNNCVIPITCKIRKIDNDYQKTLNLCYDLQSRGIKMITVHGRTKEEKGIN 193
D + NLI+ + N +P+T KIR D D +K+LN + G + +TVHGR +E+KG
Sbjct: 140 DLIHNLINTLHKNLKVPVTAKIRIFD-DCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQK 198
Query: 194 IKQCDYEIIRIIKERL--NIPIIANGSIEHFEDIKKCLNYTKADAVMCAEILLEKPYFFS 251
++E I+ +++ L ANG+I + EDI +C+ + ADAVM AE L P F+
Sbjct: 199 TGLANWETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFN 258
Query: 252 ---NKNIDAV-----NIVNEYFELYLKYE---SNTKYLKGHLFKFLYKYFQVHTDLRDLL 300
KN + + I+ EYF++ + + ++ +K H FK L + HTD+R L
Sbjct: 259 VGQTKNKEKIFPRVDKIIREYFQIVKECQESKASKTAMKSHFFKILRPFLPHHTDIRSTL 318
Lambda K H
0.322 0.140 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 397
Number of extensions: 18
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 340
Length of database: 423
Length adjustment: 30
Effective length of query: 310
Effective length of database: 393
Effective search space: 121830
Effective search space used: 121830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 24 (14.0 bits)
S2: 24 (13.9 bits)