Query= PF14_0086 Pf Annotation|Plasmodium_falciparum_TIGR|(protein coding) hypothetical protein (340 letters)
>YML080W DUS1 SGDID:S000004545, Chr XIII from 108806-110077,
           Verified ORF, "Dihydrouridine synthase, member of a
           widespread family of conserved proteins including Smm1p,
           Dus3p, and Dus4p; modifies pre-tRNA(Phe) at U17"
          Length = 423

 Score =  214 bits (545), Expect = 3e-60
 Identities = 118/300 (39%), Positives = 180/300 (60%), Gaps = 17/300 (5%)

Query: 17  KSFWESLGKPKYISAPMVDLSELPFRLLCRKYNCDLTFTPMLHSKNFVEHEKYRKGYFKS 76
           +  ++ +G+P  I APMVD SEL +R+L R+Y   L +TPMLH+K F   +KYR+  + S
Sbjct: 20  RQLFDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSS 79

Query: 77  CD---MDKPVIAQFCGNDSKILLEAINFIKDDVNAVDINLGCPQQIAKKGNYGAFLLHKH 133
            D   +D+P++ QFC ND + LL A   ++D  +AVD+NLGCPQ IAKKG+YG+FL+ + 
Sbjct: 80  LDGSSVDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEW 139

Query: 134 DEVVNLISDITNNCVIPITCKIRKIDNDYQKTLNLCYDLQSRGIKMITVHGRTKEEKGIN 193
           D + NLI+ +  N  +P+T KIR  D D +K+LN    +   G + +TVHGR +E+KG  
Sbjct: 140 DLIHNLINTLHKNLKVPVTAKIRIFD-DCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQK 198

Query: 194 IKQCDYEIIRIIKERL--NIPIIANGSIEHFEDIKKCLNYTKADAVMCAEILLEKPYFFS 251
               ++E I+ +++ L       ANG+I + EDI +C+ +  ADAVM AE  L  P  F+
Sbjct: 199 TGLANWETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFN 258

Query: 252 ---NKNIDAV-----NIVNEYFELYLKYE---SNTKYLKGHLFKFLYKYFQVHTDLRDLL 300
               KN + +      I+ EYF++  + +   ++   +K H FK L  +   HTD+R  L
Sbjct: 259 VGQTKNKEKIFPRVDKIIREYFQIVKECQESKASKTAMKSHFFKILRPFLPHHTDIRSTL 318
Lambda     K      H
   0.322    0.140    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 397
Number of extensions: 18
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 340
Length of database: 423
Length adjustment: 30
Effective length of query: 310
Effective length of database: 393
Effective search space:   121830
Effective search space used:   121830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 24 (14.0 bits)
S2: 24 (13.9 bits)