>YLL011W SOF1 SGDID:S000003934, Chr XII from 127522-128991, Verified
           ORF, "Essential subunit of the U3 (box C+D) snRNP
           complex required for 2' O-methylation of pre-RNA; has
           similarity to the beta subunit of trimeric G-proteins
           and the splicing factor Prp4p"
          Length = 489

 Score = 34.3 bits (77), Expect = 1e-05
 Identities = 18/65 (27%), Positives = 33/65 (50%)

Query: 68  IKIIDDHQSAIRSLDKFKEGNFFLTTGDDKTIIIYDKNWCKYMKILHKKKIVKAYFLKEV 127
           + +  DH SA+  +D    G+  +T   DK+I IY  N     +I H K++   + +K  
Sbjct: 298 LNVFKDHVSAVMDVDFSPTGDEIVTGSYDKSIRIYKTNHGHSREIYHTKRMQHVFQVKYS 357

Query: 128 QESEH 132
            +S++
Sbjct: 358 MDSKY 362

 Score = 23.1 bits (48), Expect = 0.027
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 85  KEGNFFLTTGDDKTIIIYDKN 105
           K  NF L+  DDKT+ ++  N
Sbjct: 131 KSQNFMLSCSDDKTVKLWSIN 151

 Score = 21.9 bits (45), Expect = 0.060
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 62  LKDMKFIKIIDDHQSAIRSLDKFK----EGNFFLTTGDDKTIIIYD 103
           L D+  +K + D      ++   K    E +   +TG D +I++YD
Sbjct: 203 LWDVNRLKPVSDLSWGADNITSLKFNQNETDILASTGSDNSIVLYD 248

 Score = 18.9 bits (37), Expect = 0.51
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 551 GLINYWKHTTIEGIIN 566
           G+I YW  +T E  ++
Sbjct: 90  GVIKYWNMSTREEFVS 105

 Score = 18.9 bits (37), Expect = 0.51
 Identities = 5/15 (33%), Positives = 10/15 (66%)

Query: 393 VHLWNIKKKEVVDSL 407
           +HLW++ + + V  L
Sbjct: 201 IHLWDVNRLKPVSDL 215

 Score = 18.1 bits (35), Expect = 0.86
 Identities = 6/15 (40%), Positives = 9/15 (60%)

Query: 388 SADCYVHLWNIKKKE 402
           SAD  +  WN+  +E
Sbjct: 87  SADGVIKYWNMSTRE 101

 Score = 15.8 bits (29), Expect = 4.3
 Identities = 5/14 (35%), Positives = 7/14 (50%)

Query: 90  FLTTGDDKTIIIYD 103
           F+T  +D     YD
Sbjct: 277 FVTANEDHNAYYYD 290

Lambda     K      H
   0.323    0.142    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 543
Number of extensions: 27
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 7
Length of query: 566
Length of database: 489
Length adjustment: 35
Effective length of query: 531
Effective length of database: 454
Effective search space:   241074
Effective search space used:   241074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 26 (14.9 bits)
S2: 26 (14.6 bits)