Query= PF14_0150 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) RNA polymerase
small subunit, putative
(96 letters)
>FBgn0032762 type=protein;
loc=2L:complement(19133052..19133351,
19133409..19133426); ID=FBpp0080704; name=CG10685-PA;
parent=FBgn0032762,FBtr0081161;
dbxref=GB_protein:AAF53770.1,FlyBase:FBpp0080704,
FlyBase_Annotation_IDs:CG10685-PA,GB_protein:AAF53770;
MD5=bcd0e89ea51e33821d7bbe65c7a03d72; release=r5.1;
species=Dmel; length=105;
Length = 105
Score = 79.3 bits (194), Expect = 1e-20
Identities = 36/79 (45%), Positives = 52/79 (65%)
Query: 17 TFCFENEDHTLGNCLRCILLQKEGVEFAGYTVPHPTQPEINVRIQTTGKPAIDILKESLD 76
TF F NE HTLGN L+ I+ + V+F GYT+PHPT+ +++ RIQ+ AIDILK L+
Sbjct: 19 TFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRDRAIDILKRGLE 78
Query: 77 DLGNMCDIMLNKFNEALKQ 95
DL +CD + F + + +
Sbjct: 79 DLEGLCDHTIVTFEKEMAE 97
Score = 14.6 bits (26), Expect = 0.32
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 6/20 (30%)
Query: 24 DHTLGNCLRCILLQKEGVEF 43
DHT+ + +KE EF
Sbjct: 85 DHTI------VTFEKEMAEF 98
Lambda K H
0.318 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 96
Length of database: 105
Length adjustment: 11
Effective length of query: 85
Effective length of database: 94
Effective search space: 7990
Effective search space used: 7990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 14 ( 6.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 14 ( 9.3 bits)
S2: 14 (10.0 bits)