Query= PF14_0150 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) RNA polymerase
small subunit, putative
(96 letters)
>YNL113W RPC19 SGDID:S000005057, Chr XIV from 412773-413201,
Verified ORF, "RNA polymerase subunit, common to RNA
polymerases I and III"
Length = 142
Score = 85.9 bits (211), Expect = 1e-22
Identities = 44/102 (43%), Positives = 66/102 (64%), Gaps = 9/102 (8%)
Query: 2 EEKKYYENLKNLTHAT--------FCFENEDHTLGNCLRCILLQKEGVEFAGYTVPHPTQ 53
EE+ E +K LT AT F EDHTLGN LR ++++ VEF GY++PHP++
Sbjct: 39 EEEPDREKIKLLTQATSEDGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSE 98
Query: 54 PEINVRIQTTGK-PAIDILKESLDDLGNMCDIMLNKFNEALK 94
+N+RIQT G+ A+D L++ L DL ++CD++ +KF E +K
Sbjct: 99 NLLNIRIQTYGETTAVDALQKGLKDLMDLCDVVESKFTEKIK 140
Lambda K H
0.318 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 96
Length of database: 142
Length adjustment: 13
Effective length of query: 83
Effective length of database: 129
Effective search space: 10707
Effective search space used: 10707
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 6.9 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 15 ( 9.8 bits)
S2: 15 (10.4 bits)