>YPL266W DIM1 SGDID:S000006187, Chr XVI from 39121-40077, Verified
           ORF, "Essential 18S rRNA dimethylase, responsible for
           conserved m6(2)Am6(2)A dimethylation in 3'-terminal loop
           of 18 S rRNA, part of 90S and 40S pre-particles in
           nucleolus, involved in pre-ribosomal RNA processing"
          Length = 318

 Score =  236 bits (603), Expect = 5e-67
 Identities = 124/283 (43%), Positives = 186/283 (65%), Gaps = 7/283 (2%)

Query: 77  GQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEV 136
           GQH+LKNP +   I+  A+I+ SD+VLE+G GTGNLTV++L  AK V+ +++D RM +E+
Sbjct: 35  GQHILKNPLVAQGIVDKAQIRPSDVVLEVGPGTGNLTVRILEQAKNVVAVEMDPRMAAEL 94

Query: 137 KKRCLYEGYNN-LEVYEGDAIKTVFPKFDVCTANIPYKISSPLIFKLISHRPLFKCAVLM 195
            KR         LE+  GD +KT  P FD+C +N PY+ISSPL+FKLI+     + ++LM
Sbjct: 95  TKRVRGTPVEKKLEIMLGDFMKTELPYFDICISNTPYQISSPLVFKLINQPRPPRVSILM 154

Query: 196 FQKEFAERMLANVGDSNYSRLTINVKLFCKVTKVCNVNRSSFNPPPKVDSVIVKLIPKES 255
           FQ+EFA R+LA  GDS Y RL+ NV+++  VT +  V +++F PPP+V+S +V+L  K  
Sbjct: 155 FQREFALRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFRPPPQVESSVVRLEIKNP 214

Query: 256 SFLTNFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEHNYKNWCTLNKQV------PVN 309
               +++EWD LLRI F RK +T+ A FK   V+++LE NYK +  +N ++       ++
Sbjct: 215 RPQVDYNEWDGLLRIVFVRKNRTISAGFKSTTVMDILEKNYKTFLAMNNEMVDDTKGSMH 274

Query: 310 FPFKKYCLDVLEHLDMCEKRSINLDENDFLKLLLEFNKKGIHF 352
              K+    VL+  D+ +KR+   D+NDFL+LL  F++ GIHF
Sbjct: 275 DVVKEKIDTVLKETDLGDKRAGKCDQNDFLRLLYAFHQVGIHF 317

Lambda     K      H
   0.322    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 290
Number of extensions: 12
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 318
Length adjustment: 29
Effective length of query: 352
Effective length of database: 289
Effective search space:   101728
Effective search space used:   101728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 23 (13.6 bits)
S2: 23 (13.5 bits)