Query= PF14_0174 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) hypothetical
protein, conserved
(466 letters)
>YLR175W CBF5 SGDID:S000004165, Chr XII from 506136-507587, Verified
ORF, "Component of box H/ACA small nucleolar
ribonucleoprotein particles (snoRNPs), probable rRNA
pseudouridine synthase, binds to snoRNP Nop10p and also
interacts with ribosomal biogenesis protein Nop53p"
Length = 483
Score = 509 bits (1311), Expect = e-149
Identities = 239/388 (61%), Positives = 307/388 (79%), Gaps = 2/388 (0%)
Query: 5 KMDYKIEPERKEAAIDTSNWPLLLKNYDKLNIRTSHFTPLPMGNSPYSRNIEEYLKYGII 64
K D+ I+PE A+ DTS WPLLLKN+DKL +R+ H+TP+P G+SP R+++ Y+ G+I
Sbjct: 3 KEDFVIKPEAAGASTDTSEWPLLLKNFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVI 62
Query: 65 NLDKPSNPSSHEVVSWIRKILRCEKTGHSGTLDPKVTGVLLVCLNRATRLVKSQQESGKE 124
NLDKPSNPSSHEVV+WI++ILRCEKTGHSGTLDPKVTG L+VC++RATRLVKSQQ +GKE
Sbjct: 63 NLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKE 122
Query: 125 YVCVCKFHSKPKSIEEVKLVLNNFQGAIFQRPPLICAVKRQLRVRTIYDSKLLDYDETNN 184
YVC+ + H K +++ L N GA+FQRPPLI AVKRQLRVRTIY+S L+++D N
Sbjct: 123 YVCIVRLHDALKDEKDLGRSLENLTGALFQRPPLISAVKRQLRVRTIYESNLIEFDNKRN 182
Query: 185 VCVFWVKCQAGTYIRTLCEHIGLLLGVGAHMQELRRVKSGNMTEYDNMCTLHDILDAQYI 244
+ VFW C+AGTY+RTLC H+G+LLGVG HMQELRRV+SG ++E DNM TLHD++DAQ++
Sbjct: 183 LGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDAQWV 242
Query: 245 YDTTGDESYLRKIITPLEKLLINFPRIVIKDSAVNAICYGAKLTIPGVLRFDNNIDVNTE 304
YD T DESYLR II PLE LL+ + RIV+KDSAVNA+CYGAKL IPG+LR++ I++ E
Sbjct: 243 YDNTRDESYLRSIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDE 302
Query: 305 IVIMTTKGEAVALAIAQMTSTVIATVDHGVVSLTKRVIMDRDTYDVKWGFGNRSMEKKKL 364
IV++TTKGEA+A+AIAQM++ +A+ DHGVV+ KR IM+RD Y +WG G + +KK++
Sbjct: 303 IVLITTKGEAIAVAIAQMSTVDLASCDHGVVASVKRCIMERDLYPRRWGLGPVAQKKKQM 362
Query: 365 ILAGLLDKYGKPNEKTPLSWIKSEGYAP 392
G LDKYG+ NE TP W K Y P
Sbjct: 363 KADGKLDKYGRVNENTPEQWKKE--YVP 388
Lambda K H
0.318 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 701
Number of extensions: 22
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 483
Length adjustment: 33
Effective length of query: 433
Effective length of database: 450
Effective search space: 194850
Effective search space used: 194850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 26 (14.8 bits)
S2: 26 (14.6 bits)