Query= PF14_0177 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) DNA replication
licensing factor MCM2
(971 letters)
>YBL023C MCM2 SGDID:S000000119, Chr II from 177529-174923, reverse
complement, Verified ORF, "Protein involved in DNA
replication; component of the Mcm2-7 hexameric complex
that binds chromatin as a part of the pre-replicative
complex"
Length = 868
Score = 495 bits (1275), Expect = e-144
Identities = 290/660 (43%), Positives = 405/660 (61%), Gaps = 67/660 (10%)
Query: 238 DKHTLIVSAKHLIQFHCENLVQWIEFKPEQILEVLHECLMVEAYRISPKLYKGRICKVVL 297
+ +L V+ +HL + L ++ PE++L++ + + +EA + Y ++ +
Sbjct: 238 NSESLEVNYRHLAESKAI-LALFLAKCPEEMLKIF-DLVAMEATELHYPDYARIHSEIHV 295
Query: 298 R--DWPYSTQLRNLRCTELNTLIKVTGVCIKRGYVLPKLRVMYLKCNSCDTTLSEVPIYF 355
R D+P LR LR + L++L++VTGV +R V P+L+ + C C + L +F
Sbjct: 296 RISDFPTIYSLRELRESNLSSLVRVTGVVTRRTGVFPQLKYVKFNCLKCGSILGP---FF 352
Query: 356 ADGKKPVLPRRCPHCQS-ATFSVDRIKTAYTDYQKITLQESPCSVPAGRAPRQREVVVTG 414
D + + C +C+S F V+ KT Y +YQ++TLQE+P +VP GR PR REV++
Sbjct: 353 QDSNEEIRISFCTNCKSKGPFRVNGEKTVYRNYQRVTLQEAPGTVPPGRLPRHREVILLA 412
Query: 415 DLVDKVKPGEEVEVLGIYKTKYDIGLNIKYGFPILQTEIEANNIERKEDIQLSE------ 468
DLVD KPGEEVEV GIYK YD LN K GFP+ T IEAN+I+R+E +E
Sbjct: 413 DLVDVSKPGEEVEVTGIYKNNYDGNLNAKNGFPVFATIIEANSIKRREGNTANEGEEGLD 472
Query: 469 ---LTEXXXXXXXXXXXXPNIRERIITSIAPAIWGHKDIKTSIAYALFGGVQKGGDKSFS 525
TE I ++II+S+AP+I+GH+DIKT++A +LFGGV K
Sbjct: 473 VFSWTEEEEREFRKISRDRGIIDKIISSMAPSIYGHRDIKTAVACSLFGGVPK------- 525
Query: 526 KNNETNNFGVQNRDILNNFKGGHTIRGDINVLLLGDPGLGKSQVLQYVHKTNLRTVYTTG 585
N G H+IRGDINVLLLGDPG KSQ+L+YV KT R V+ TG
Sbjct: 526 -----------------NVNGKHSIRGDINVLLLGDPGTAKSQILKYVEKTAHRAVFATG 568
Query: 586 KGASAVGLTAGVRKDHTTNEWTLEGGALVLADEGICIIDEFDKMTDKDRVSIHEAMEQQS 645
+GASAVGLTA VRKD T EWTLEGGALVLAD+G+C+IDEFDKM D+DR SIHEAMEQQS
Sbjct: 569 QGASAVGLTASVRKDPITKEWTLEGGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQS 628
Query: 646 ISISKAGIVTTLRARCAVIAAANPIYGRYDPSLTFKENVDLSDPILSRFDLITVLRDIPN 705
ISISKAGIVTTL+ARC++IAAANP GRY+ +L +NV L++PILSRFD++ V+RD+ +
Sbjct: 629 ISISKAGIVTTLQARCSIIAAANPNGGRYNSTLPLAQNVSLTEPILSRFDILCVVRDLVD 688
Query: 706 VDEDFYLAEYVVTNHQLSHPKLENTQNYQKRIENLKNVIVSSS----------------- 748
+ D LA +VV +H SHP+ + + ++ N ++ I
Sbjct: 689 EEADERLATFVVDSHVRSHPENDEDREGEELKNNGESAIEQGEDEINEQLNARQRRLQRQ 748
Query: 749 -----AYEPIPQDLLQKYIIYARTNCKPSLSDVPYAEISAKLSNFYSRVRQKASASGGYP 803
PIPQ+LL KYI YART P L + K+S Y+ +R+++ ++G +P
Sbjct: 749 RKKEEEISPIPQELLMKYIHYARTKIYPKLHQMDMD----KVSRVYADLRRESISTGSFP 804
Query: 804 LTLRHIESIIRIAEANAKMRLSHQIYSKDVDYAIATLLESYVSCQRFAVAKQLSKEFARY 863
+T+RH+ESI+RIAE+ AKMRLS + S D+D AI +++S+V Q+ +V +QL + FA Y
Sbjct: 805 ITVRHLESILRIAESFAKMRLSEFVSSYDLDRAIKVVVDSFVDAQKVSVRRQLRRSFAIY 864
Score = 18.5 bits (36), Expect = 2.1
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 56 DDEKKEMQKLRNLGXXXXXXXXXXXXXXXXXXXXLKARRAAERHMQMQRKQE 107
+DE +E ++L+N G + A +R +Q QRK+E
Sbjct: 710 NDEDREGEELKNNGESAIEQGEDEIN---------EQLNARQRRLQRQRKKE 752
Score = 16.5 bits (31), Expect = 8.0
Identities = 4/7 (57%), Positives = 7/7 (100%)
Query: 702 DIPNVDE 708
D+P++DE
Sbjct: 57 DVPDIDE 63
Lambda K H
0.318 0.134 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1663
Number of extensions: 78
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 3
Length of query: 971
Length of database: 868
Length adjustment: 43
Effective length of query: 928
Effective length of database: 825
Effective search space: 765600
Effective search space used: 765600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 31 (17.1 bits)
S2: 31 (16.5 bits)