>YGR048W UFD1 SGDID:S000003280, Chr VII from 589830-590915, Verified
           ORF, "Protein that interacts with Cdc48p and Npl4p,
           involved in recognition of polyubiquitinated proteins
           and their presentation to the 26S proteasome for
           degradation; involved in transporting proteins from the
           ER to the cytosol"
          Length = 361

 Score =  138 bits (348), Expect = 1e-37
 Identities = 73/177 (41%), Positives = 117/177 (66%), Gaps = 10/177 (5%)

Query: 16  TALNALARRHISWPMLFE------DKRTHSGVLEFISDEGTCHMPYWMMQQLNLKEGDIV 69
           +AL+ L+  +I +PMLF+       + TH GVLEFI++EG  ++P WMM+ L ++ G ++
Sbjct: 53  SALSKLSMLNIRYPMLFKLTANETGRVTHGGVLEFIAEEGRVYLPQWMMETLGIQPGSLL 112

Query: 70  RVTSVSLPKGTFVKLKPCSKDFMELSNHRAVLETALRNYATLTIGDNIVIHYLGKTYEIK 129
           +++S  +P G FVKL+P S DF+++S+ +AVLE  LRN++TLT+ D I I Y GKT++IK
Sbjct: 113 QISSTDVPLGQFVKLEPQSVDFLDISDPKAVLENVLRNFSTLTVDDVIEISYNGKTFKIK 172

Query: 130 IVDLKP---AFACTIIETDVEVEFEEPIDHSEPVQYVTEIVPEEENKFK-GKGQRTD 182
           I+++KP   + +  +IETD+  +F  P+ + EP     +   ++E K   GKGQ  D
Sbjct: 173 ILEVKPESSSKSICVIETDLVTDFAPPVGYVEPDYKALKAQQDKEKKNSFGKGQVLD 229

 Score = 15.0 bits (27), Expect = 2.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 60  QLNLKEGDIVRVTSVSLPK 78
           +L+L EG +     + LPK
Sbjct: 291 KLDLPEGQLFFGFPMVLPK 309

Lambda     K      H
   0.324    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 226
Number of extensions: 13
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 259
Length of database: 361
Length adjustment: 27
Effective length of query: 232
Effective length of database: 334
Effective search space:    77488
Effective search space used:    77488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 22 (13.1 bits)
S2: 22 (13.1 bits)