Query= PF14_0178 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) hypothetical
protein
(259 letters)
>YGR048W UFD1 SGDID:S000003280, Chr VII from 589830-590915, Verified
ORF, "Protein that interacts with Cdc48p and Npl4p,
involved in recognition of polyubiquitinated proteins
and their presentation to the 26S proteasome for
degradation; involved in transporting proteins from the
ER to the cytosol"
Length = 361
Score = 138 bits (348), Expect = 1e-37
Identities = 73/177 (41%), Positives = 117/177 (66%), Gaps = 10/177 (5%)
Query: 16 TALNALARRHISWPMLFE------DKRTHSGVLEFISDEGTCHMPYWMMQQLNLKEGDIV 69
+AL+ L+ +I +PMLF+ + TH GVLEFI++EG ++P WMM+ L ++ G ++
Sbjct: 53 SALSKLSMLNIRYPMLFKLTANETGRVTHGGVLEFIAEEGRVYLPQWMMETLGIQPGSLL 112
Query: 70 RVTSVSLPKGTFVKLKPCSKDFMELSNHRAVLETALRNYATLTIGDNIVIHYLGKTYEIK 129
+++S +P G FVKL+P S DF+++S+ +AVLE LRN++TLT+ D I I Y GKT++IK
Sbjct: 113 QISSTDVPLGQFVKLEPQSVDFLDISDPKAVLENVLRNFSTLTVDDVIEISYNGKTFKIK 172
Query: 130 IVDLKP---AFACTIIETDVEVEFEEPIDHSEPVQYVTEIVPEEENKFK-GKGQRTD 182
I+++KP + + +IETD+ +F P+ + EP + ++E K GKGQ D
Sbjct: 173 ILEVKPESSSKSICVIETDLVTDFAPPVGYVEPDYKALKAQQDKEKKNSFGKGQVLD 229
Score = 15.0 bits (27), Expect = 2.4
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 60 QLNLKEGDIVRVTSVSLPK 78
+L+L EG + + LPK
Sbjct: 291 KLDLPEGQLFFGFPMVLPK 309
Lambda K H
0.324 0.139 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 226
Number of extensions: 13
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 259
Length of database: 361
Length adjustment: 27
Effective length of query: 232
Effective length of database: 334
Effective search space: 77488
Effective search space used: 77488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 22 (13.1 bits)
S2: 22 (13.1 bits)