>YJL033W HCA4 SGDID:S000003570, Chr X from 383754-386066, Verified
           ORF, "Putative nucleolar DEAD box RNA helicase;
           high-copy number suppression of a U14 snoRNA processing
           mutant suggests an involvement in 18S rRNA synthesis"
          Length = 770

 Score =  256 bits (653), Expect = 5e-72
 Identities = 163/458 (35%), Positives = 244/458 (53%), Gaps = 16/458 (3%)

Query: 116 DKNVLTSAEFKTLPISKRTLRALNENNFIYMTNIQYVSLPIVLLNKHIYAQAQTGTGKTL 175
           D  +  +  FK LPIS  TL+ L E++FI +T IQ  S+P+ L    + A A+TG+GKTL
Sbjct: 34  DPKITKAKFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTL 93

Query: 176 CFCIPLIEKMYRNSIDNYNKILGGIIITPTRELVFQIFEVLNMLNKYHKLNICCAIGGKN 235
            F +P+IEK+YR     ++  LG +II+PTREL  QI+EVL  +  +   +    IGGK+
Sbjct: 94  AFLVPVIEKLYREKWTEFDG-LGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKD 152

Query: 236 EEKEKSIFSYANIIVCTTGRLLYHLENNYYCNLDYLSTXXXXXXXXXXXXSFYDNLKNIL 295
            + E    S  NI++ T GR+L HL+     N   L               F   L  I+
Sbjct: 153 VKFELERISRINILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIV 212

Query: 296 LYKPKENCQICLFSATICKFLNVILNTFHIKDYEYVSIND------NDKYIESNNVKQIY 349
                   Q  LFSAT  + +   L    + DY+ V  +D      N +      ++Q Y
Sbjct: 213 STLSPSR-QTLLFSATQSQSV-ADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFY 270

Query: 350 IECDIYEKINYLYTFLFSKKNKKIIVFFSTCKQVRFMYEVFKKIKVGVMKFLQLHGKLKQ 409
           IE  + +K++ L++F+ S    K+IVF S+ KQV F+YE F+K++ G+   + LHG+ KQ
Sbjct: 271 IEVPLADKLDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGI-SLMHLHGRQKQ 329

Query: 410 TSRLNTYHFFSKKKNFVCLFTTDIACRGLDFSSIDWVIHFDFPDNIETFIHRSGRTGRFT 469
            +R  T   F++ +  VCLF TD+  RG+DF ++DWV+  D P++++T+IHR GR  R+ 
Sbjct: 330 RARTETLDKFNRAQQ-VCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYG 388

Query: 470 NMGNSLIFLTKQIDNKKLFLNVLKDNNXXXXXXXXXXXXXXDIKNKIHSLNAAFVDIKHL 529
             G SLI LT Q   ++ FL  L                   IK ++ SL     ++K+L
Sbjct: 389 KKGKSLIMLTPQ--EQEAFLKRLNARKIEPGKLNIKQSKKKSIKPQLQSLLFKDPELKYL 446

Query: 530 AKKALIIYLRHLYIVMKFKDIKK--KIQLNELAYSYGL 565
            +KA I Y+R +Y V K K + K  ++   E AYS GL
Sbjct: 447 GQKAFISYVRSIY-VQKDKQVFKFDELPTEEFAYSLGL 483

 Score = 19.2 bits (38), Expect = 1.1
 Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 30/120 (25%)

Query: 579 NDEKEVQVKKKKSRLEKFLEIXXXXXXXXXXXXXXXXXXXXXXXTQDEKEYDNDNEQGH- 637
           N +K+V  +KK+ +  K LE                           E+E   D E+G  
Sbjct: 658 NIDKQVAKEKKQEKKRKRLEAMRREMEAAM-----------------EEEISGDEEEGKT 700

Query: 638 -------EIYDEAHENYMCE----IKKKKRVKDISH-IDQSQSNENPFIHSDIQSDQDDL 685
                   + D+  +  M +    +KKK R  D SH  + S S ++  I  +     +DL
Sbjct: 701 VAYLGTGNLSDDMSDGDMPDSEGHLKKKARTVDYSHGHNPSNSVDDDIIEVEEPQTLEDL 760

 Score = 18.9 bits (37), Expect = 1.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 843 NESDDFVKNKKKISE 857
           +E DDF+  K+K  E
Sbjct: 561 DEDDDFISVKRKDHE 575

 Score = 18.5 bits (36), Expect = 1.8
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 776 IESLKEKIQRDNEKMKISKLRKKKDFIADRKK 807
           IE  KE+     +   +SK  +  + I D+ K
Sbjct: 497 IEQAKERKNAPRQLAFLSKANEDGEVIEDKSK 528

 Score = 18.1 bits (35), Expect = 2.4
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 12/52 (23%)

Query: 631 NDNEQGHEIYD-----EAHENYMCEIKKKKRVK-------DISHIDQSQSNE 670
           +D  + H +Y+     E H+    E++K + +        DI +ID+  + E
Sbjct: 615 DDEGEAHPVYELEDEEEFHKRGDAEVQKTEFLTKESAVMADIDNIDKQVAKE 666

 Score = 18.1 bits (35), Expect = 2.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 573 INELNINDEKEVQVKKKKSRLE 594
           I+ ++    KE + +KK+ RLE
Sbjct: 656 IDNIDKQVAKEKKQEKKRKRLE 677

 Score = 17.3 bits (33), Expect = 4.0
 Identities = 5/18 (27%), Positives = 12/18 (66%)

Query: 844 ESDDFVKNKKKISEKCDP 861
           + D++++N K   ++ DP
Sbjct: 18  KEDEYIENLKTKIDEYDP 35

Lambda     K      H
   0.318    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1570
Number of extensions: 74
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 8
Length of query: 946
Length of database: 770
Length adjustment: 42
Effective length of query: 904
Effective length of database: 728
Effective search space:   658112
Effective search space used:   658112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 30 (16.6 bits)
S2: 30 (16.2 bits)