>YFL002C SPB4 SGDID:S000001894, Chr VI from 146929-145109, reverse
           complement, Verified ORF, "Putative ATP-dependent RNA
           helicase, nucleolar protein required for synthesis of
           60S ribosomal subunits at a late step in the pathway;
           sediments with 66S pre-ribosomes in sucrose gradients"
          Length = 606

 Score = 61.6 bits (148), Expect = 2e-13
 Identities = 65/235 (27%), Positives = 104/235 (44%), Gaps = 40/235 (17%)

Query: 273 NIQAIIITPTRELCIQIYNLINKFLFFLRFYISHTLNNNMDNNVLTKENFFINCLLFRGA 332
           +  ++II PTREL  QI +++   L FL  Y S              + F I C L  G 
Sbjct: 83  HFHSLIIAPTRELSRQIESVV---LSFLEHYPS--------------DLFPIKCQLLVGT 125

Query: 333 VKISEDXXXXXXXXXXXXRYQIIISTPGKLSSLLSEYNNKYFNTNELKYFVLDEGDKLLE 392
              +E             R QI+I TPG++   L     K   T+     V+DE D+LL+
Sbjct: 126 ---NEATVRDDVSNFLRNRPQILIGTPGRVLDFLQMPAVK---TSACSMVVMDEADRLLD 179

Query: 393 DSYIRYMENIIKNIQAYDYTTCICSATCLQEENVYNLFQVKKKNFIK-CINTNNQDNSST 451
            S+I+  E I++ +      T + SAT     +  ++F+   +N ++  +N+ NQ  SS 
Sbjct: 180 MSFIKDTEKILR-LLPKQRRTGLFSATMRSAGS--DIFKTGLRNPVRITVNSKNQAPSSL 236

Query: 452 VINTYQMPDRIQNYYIILRNIDKALFLFKFLNTMVNDNETVIVFFPTCLCVEFFF 506
            +N           Y ++   +K   L   LN      +  IV+FPTC+ V +F+
Sbjct: 237 KLN-----------YCVVNPAEKLQLLVSILNNY--KFKKCIVYFPTCVSVSYFY 278

 Score = 51.6 bits (122), Expect = 2e-10
 Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 21/121 (17%)

Query: 597 KYIGEKK---NNFNFLKIHRKMKDKKRVATYNKIINTCVSNKGTKKKENRNINSERKIIF 653
           +Y+G++    N      +H K++   R  T     ++ +SN                ++F
Sbjct: 282 QYLGKRNILVNEVEIFSLHGKLQTSARTKTLTAFTDS-LSNS---------------VLF 325

Query: 654 CTDIISRGINM-DIHWVINYDAANKNMTYIHRSGRTGRFDKTGKNIILLNK-EEKEYIYF 711
            TD+ +RGI++ D+  VI  D       ++HR GRTGR ++ GK I  LN+  E+++I F
Sbjct: 326 TTDVAARGIDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRVGKAITFLNEGREEDFIPF 385

Query: 712 L 712
           +
Sbjct: 386 M 386

 Score = 40.8 bits (94), Expect = 3e-07
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 35 IQKKTIPPLIKKENVLLHSQTGSGKTLCFVIPILQYLIHHRNKLCPNDEKFIK 87
          +Q  TIP L   ++V++ S TGSGKT  FVIP+L+ ++        N  KF K
Sbjct: 33 VQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEE----ANTSKFKK 81

 Score = 36.6 bits (83), Expect = 6e-06
 Identities = 22/103 (21%), Positives = 47/103 (45%), Gaps = 16/103 (15%)

Query: 826 FVIENREIYLLSTKAFLSYIEFYKNHQLKFIFSFNKLNLTHLCYAFSLXXXXXXXXXXXX 885
           +++E+R+ +    KA++++I++Y NH    IF    L+   +   + L            
Sbjct: 414 WILEDRDRFDKGVKAYVAFIKYYSNHSATSIFRLQSLDYVGIAKLYGLFRLPRMPEITKY 473

Query: 886 XNFQN--------------INIQSFQIPYKNEEKEKKRQEHLK 914
              +               +N+  ++  YK++++EK+RQE LK
Sbjct: 474 LATEKQEGIFPGNWLVDPPVNMDEYK--YKDKKREKERQETLK 514

 Score = 17.3 bits (33), Expect = 3.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 948 EQRELEENEIDSLFYEE 964
           E+ +LE   I + FYE+
Sbjct: 394 EELDLEVKGITTNFYED 410

 Score = 17.3 bits (33), Expect = 3.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 693 KTGKNIILLNKEEK 706
           +T KNI L+N ++K
Sbjct: 511 ETLKNISLINDKKK 524

 Score = 17.3 bits (33), Expect = 3.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 690 RFDKTGKNIILLNKEEK 706
           R  +  K I+L NK +K
Sbjct: 577 RIKEDWKEIVLQNKRKK 593

 Score = 16.2 bits (30), Expect = 7.7
 Identities = 5/6 (83%), Positives = 5/6 (83%)

Query: 725 TDMFQH 730
           TDMF H
Sbjct: 351 TDMFMH 356

Lambda     K      H
   0.321    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1284
Number of extensions: 79
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 8
Length of query: 1041
Length of database: 606
Length adjustment: 41
Effective length of query: 1000
Effective length of database: 565
Effective search space:   565000
Effective search space used:   565000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 30 (16.8 bits)
S2: 30 (16.2 bits)