>YGL078C DBP3 SGDID:S000003046, Chr VII from 361862-360291, reverse
           complement, Verified ORF, "Putative ATP-dependent RNA
           helicase of the DEAD-box family involved in ribosomal
           biogenesis"
          Length = 523

 Score = 57.0 bits (136), Expect = 3e-12
 Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 39/222 (17%)

Query: 274 IQAIIITPTRELCIQIYNLINKFLFFLRFYISHTLNNNMDNNVLTKENFFINCLLFRGAV 333
           IQ ++I+PTREL  QIY                      DN ++  +   + C    G V
Sbjct: 183 IQVLVISPTRELASQIY----------------------DNLIVLTDKVGMQCCCVYGGV 220

Query: 334 KISEDXXXXXXXXXXXXRYQIIISTPGKLSSLLSEYNNKYFNTNELKYFVLDEGDKLLED 393
              E             + Q++++TPG+L  LL E +    + +++ Y VLDE D++LE 
Sbjct: 221 PKDEQRIQLK-------KSQVVVATPGRLLDLLQEGS---VDLSQVNYLVLDEADRMLEK 270

Query: 394 SYIRYMENIIKNIQAYDYTTCICSATCLQEENVYNLFQVKKKNFIKCINTNNQDNSSTVI 453
            +   ++NII+   A    T + +AT  +E  V  L      N IK ++  N D  +   
Sbjct: 271 GFEEDIKNIIRETDASKRQTLMFTATWPKE--VRELASTFMNNPIK-VSIGNTDQLTANK 327

Query: 454 NTYQMPDRIQNYYIILRNIDKALFLFKFLNTMVNDNETVIVF 495
              Q+ + +           K L L K  ++    NE V++F
Sbjct: 328 RITQIVEVVDP----RGKERKLLELLKKYHSGPKKNEKVLIF 365

 Score = 42.4 bits (98), Expect = 9e-08
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 8/125 (6%)

Query: 590 KLICYMNKYIGEKKNNFNFLKIHRKMKDKKRVAT---YNKIINTCVSNKGTKKKENRNIN 646
           KL+  + KY    K N   L      K+  RV     YN      +    ++++  + +N
Sbjct: 344 KLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALN 403

Query: 647 S----ERKIIFCTDIISRGINM-DIHWVINYDAANKNMTYIHRSGRTGRFDKTGKNIILL 701
                +  ++  TD+ +RG+++ ++  VIN         Y+HR GRTGR  +TG    L 
Sbjct: 404 EFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLF 463

Query: 702 NKEEK 706
            ++EK
Sbjct: 464 TEQEK 468

 Score = 38.9 bits (89), Expect = 9e-07
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 11  FDELKLDESIIFSLYIQKYFYCANIQKKTIPPLIKKENVLLHSQTGSGKTLCFVIPILQY 70
           FD L LD SI     I K+     IQ    P L+  ++V+  ++TGSGKT  F +P + +
Sbjct: 116 FDYLSLDSSI--QAEISKFPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISH 173

Query: 71  LIHHRNK 77
           L++ + K
Sbjct: 174 LMNDQKK 180

 Score = 24.6 bits (52), Expect = 0.019
 Identities = 9/17 (52%), Positives = 14/17 (82%)

Query: 901 KNEEKEKKRQEHLKEKQ 917
           K E+K+KK ++H KEK+
Sbjct: 34  KKEKKDKKHKKHKKEKK 50

 Score = 21.9 bits (45), Expect = 0.12
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query: 901 KNEEKEKKRQEHLKEKQ 917
           K ++KEKK ++H K K+
Sbjct: 31  KKDKKEKKDKKHKKHKK 47

 Score = 21.9 bits (45), Expect = 0.12
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 221 DKQETNKEKHEQKIEEKYNEQNI 243
           DK+E   +KH++  +EK  E+ +
Sbjct: 33  DKKEKKDKKHKKHKKEKKGEKEV 55

 Score = 18.9 bits (37), Expect = 1.0
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 601 EKKNNFNFLKIHRKMKDKKRVATYNKIINTCVSNKGTKKKENRNINSERK 650
           EKK +    K H+K K  K+     K        KG K+ E     SE+K
Sbjct: 20  EKKKS----KKHKKDKKDKKEKKDKKHKKHKKEKKGEKEVEVPEKESEKK 65

 Score = 18.5 bits (36), Expect = 1.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 7   KKYPFDELKLDESIIFSLY 25
           KKY     K ++ +IF+LY
Sbjct: 350 KKYHSGPKKNEKVLIFALY 368

 Score = 17.7 bits (34), Expect = 2.3
 Identities = 6/17 (35%), Positives = 12/17 (70%)

Query: 901 KNEEKEKKRQEHLKEKQ 917
           K  +K+KK ++  K+K+
Sbjct: 25  KKHKKDKKDKKEKKDKK 41

 Score = 16.9 bits (32), Expect = 3.9
 Identities = 5/13 (38%), Positives = 11/13 (84%)

Query: 905 KEKKRQEHLKEKQ 917
           ++KK ++H K+K+
Sbjct: 20  EKKKSKKHKKDKK 32

 Score = 16.5 bits (31), Expect = 5.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 362 LSSLLSEYNNKYFNTNEL 379
           L+SL     ++YF  NE+
Sbjct: 83  LTSLPQSDIDEYFKENEI 100

Lambda     K      H
   0.321    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1209
Number of extensions: 63
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 1041
Length of database: 523
Length adjustment: 40
Effective length of query: 1001
Effective length of database: 483
Effective search space:   483483
Effective search space used:   483483
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 29 (16.3 bits)
S2: 29 (15.8 bits)