>YHR065C RRP3 SGDID:S000001107, Chr VIII from 229039-227534, reverse
           complement, Verified ORF, "Protein involved in rRNA
           processing; required for maturation of the 35S primary
           transcript of pre-rRNA and for cleavage leading to
           mature 18S rRNA; homologous to eIF-4a, which is a DEAD
           box RNA-dependent ATPase with helicase activity"
          Length = 501

 Score = 60.5 bits (145), Expect = 3e-13
 Identities = 43/130 (33%), Positives = 69/130 (53%), Gaps = 8/130 (6%)

Query: 354 IIISTPGKLSSLLSEYNNKYFNTNELKYFVLDEGDKLLEDSYIRYMENIIKNIQAYDYTT 413
           III+TPG+L   L   N K F+  +LK+ V+DE D+LL+  +   ++ I+K I   + TT
Sbjct: 202 IIIATPGRLMDHLE--NTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTT 259

Query: 414 CICSATCLQEENVYNLFQVKKKNFIKCINTNNQDNSSTVINTYQ-MPDRIQNYYII-LRN 471
            + SAT      +  L +    N +KC  +N      T++ T   +P  ++N Y+I L N
Sbjct: 260 YLFSAT--MTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLN 317

Query: 472 --IDKALFLF 479
             I K + +F
Sbjct: 318 EFIGKTMIIF 327

 Score = 50.4 bits (119), Expect = 3e-10
 Identities = 34/127 (26%), Positives = 66/127 (51%), Gaps = 13/127 (10%)

Query: 591 LICYMNKYIGEKKNNFNFLKIHRKMKDKKRVATYNKIINTCVSNKGTKKKENRNINS--- 647
           LI  +N++IG+    F      R   + +R++    ++    +       +N+ + S   
Sbjct: 312 LIYLLNEFIGKTMIIFT-----RTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDL 366

Query: 648 ----ERKIIFCTDIISRGINM-DIHWVINYDAANKNMTYIHRSGRTGRFDKTGKNIILLN 702
               +R I+  TD+ +RG+++  +  V+NYD    + +YIHR GRT R  ++GK+I L++
Sbjct: 367 FKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 426

Query: 703 KEEKEYI 709
           + + E I
Sbjct: 427 QYDLELI 433

 Score = 47.4 bits (111), Expect = 3e-09
 Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 2   NEEEKKKYPFDELKLDESIIFSLYIQKYFYCANIQKKTIPPLIKKENVLLHSQTGSGKTL 61
           NE+E  +  F EL L   +I +     Y     IQ K IPP ++  +++  +QTGSGKT 
Sbjct: 75  NEDESFE-SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTA 133

Query: 62  CFVIPILQYLIH 73
            F IPIL  L H
Sbjct: 134 AFAIPILNRLWH 145

Lambda     K      H
   0.321    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 957
Number of extensions: 42
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 4
Length of query: 1041
Length of database: 501
Length adjustment: 40
Effective length of query: 1001
Effective length of database: 461
Effective search space:   461461
Effective search space used:   461461
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 29 (16.3 bits)
S2: 29 (15.8 bits)