>YJL033W HCA4 SGDID:S000003570, Chr X from 383754-386066, Verified
           ORF, "Putative nucleolar DEAD box RNA helicase;
           high-copy number suppression of a U14 snoRNA processing
           mutant suggests an involvement in 18S rRNA synthesis"
          Length = 770

 Score = 57.0 bits (136), Expect = 5e-12
 Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 18/119 (15%)

Query: 590 KLICYMNKYIGEKKNNFNFLKIHRKMKDKKRVATYNKIINTCVSNKGTKKKENRNINSER 649
           K + ++ +   + +   + + +H + K + R  T +K               NR   +++
Sbjct: 302 KQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDKF--------------NR---AQQ 344

Query: 650 KIIFCTDIISRGINMD-IHWVINYDAANKNMTYIHRSGRTGRFDKTGKNIILLNKEEKE 707
             +F TD+++RGI+   + WV+  D      TYIHR GR  R+ K GK++I+L  +E+E
Sbjct: 345 VCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQEQE 403

 Score = 56.6 bits (135), Expect = 7e-12
 Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 38/231 (16%)

Query: 276 AIIITPTRELCIQIYNLINKFLFFLRFYISHTLNNNMDNNVLTKENFFINCLLFRGAVKI 335
           A+II+PTREL +QIY ++ K         SHT             +F    ++    VK 
Sbjct: 116 ALIISPTRELAMQIYEVLTKIG-------SHT-------------SFSAGLVIGGKDVKF 155

Query: 336 SEDXXXXXXXXXXXXRYQIIISTPGKLSSLLSEYNNKYFNTNELKYFVLDEGDKLLEDSY 395
             +            R  I+I TPG++   L +      NT+ L+  VLDE D+ L+  +
Sbjct: 156 ELERIS---------RINILIGTPGRILQHLDQAVG--LNTSNLQMLVLDEADRCLDMGF 204

Query: 396 IRYMENIIKNIQAYDYTTCICSATCLQEENVYNLFQVKKKNFIKCINTNNQDNSSTVINT 455
            + ++ I+  +      T + SAT  Q ++V +L ++   ++ K + T++  + S V   
Sbjct: 205 KKTLDAIVSTLSP-SRQTLLFSAT--QSQSVADLARLSLTDY-KTVGTHDVMDGS-VNKE 259

Query: 456 YQMPDRIQNYYIILRNIDKALFLFKFLNTMVNDNETVIVFFPTCLCVEFFF 506
              P+ +Q +YI +   DK   LF F+ + +     +IVF  +   V F +
Sbjct: 260 ASTPETLQQFYIEVPLADKLDILFSFIKSHLKCK--MIVFLSSSKQVHFVY 308

 Score = 41.6 bits (96), Expect = 2e-07
 Identities = 19/65 (29%), Positives = 36/65 (55%)

Query: 11  FDELKLDESIIFSLYIQKYFYCANIQKKTIPPLIKKENVLLHSQTGSGKTLCFVIPILQY 70
           F +L + +  +  L    +     IQ  +IP  ++  +VL  ++TGSGKTL F++P+++ 
Sbjct: 43  FKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEK 102

Query: 71  LIHHR 75
           L   +
Sbjct: 103 LYREK 107

 Score = 27.3 bits (59), Expect = 0.004
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 827 VIENREIYLLSTKAFLSYIEFYKNHQLKFIFSFNKLNLTHLCYAFSL 873
           + ++ E+  L  KAF+SY+      + K +F F++L      Y+  L
Sbjct: 437 LFKDPELKYLGQKAFISYVRSIYVQKDKQVFKFDELPTEEFAYSLGL 483

 Score = 19.2 bits (38), Expect = 1.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 789 HQNGDLQIQKGE 800
           H+ GD ++QK E
Sbjct: 633 HKRGDAEVQKTE 644

 Score = 18.9 bits (37), Expect = 1.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 892 NIQSFQIPYKNEEKEKKRQEHLKEK 916
           NI       K +EK++KR E ++ +
Sbjct: 658 NIDKQVAKEKKQEKKRKRLEAMRRE 682

 Score = 18.5 bits (36), Expect = 2.0
 Identities = 8/22 (36%), Positives = 10/22 (45%)

Query: 389 KLLEDSYIRYMENIIKNIQAYD 410
           K L      Y+EN+   I  YD
Sbjct: 13  KTLRQKEDEYIENLKTKIDEYD 34

 Score = 17.7 bits (34), Expect = 3.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 844 YIEFYKNHQLKFIFSFNKLNL 864
           YIE     +L  +FSF K +L
Sbjct: 270 YIEVPLADKLDILFSFIKSHL 290

 Score = 17.3 bits (33), Expect = 4.4
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query: 983  LLNMDDIDKMFSSTSKTSK 1001
            + ++D+IDK  +   K  K
Sbjct: 653  MADIDNIDKQVAKEKKQEK 671

 Score = 16.9 bits (32), Expect = 5.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 221 DKQETNKEKHEQK 233
           DKQ   ++K E+K
Sbjct: 660 DKQVAKEKKQEKK 672

Lambda     K      H
   0.321    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1417
Number of extensions: 65
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 11
Length of query: 1041
Length of database: 770
Length adjustment: 43
Effective length of query: 998
Effective length of database: 727
Effective search space:   725546
Effective search space used:   725546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 30 (16.8 bits)
S2: 30 (16.2 bits)