Query= PF14_0185 Pf Annotation|Plasmodium_falciparum_TIGR|(protein coding) ATP-dependent RNA helicase, putative (1041 letters)
>YMR290C HAS1 SGDID:S000004903, Chr XIII from 851590-850073, reverse
           complement, Verified ORF, "ATP-dependent RNA helicase;
           localizes to both the nuclear periphery and nucleolus;
           highly enriched in nuclear pore complex fractions;
           constituent of 66S pre-ribosomal particles"
          Length = 505

 Score = 62.0 bits (149), Expect = 1e-13
 Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 41/232 (17%)

Query: 277 IIITPTRELCIQIYNLINKFLFFLRFYISHTLNNNMDNNVLTKENFFINCLLFRGAVKIS 336
           I+ITPTREL +QI+ +  + + F     S T                   ++  GA +  
Sbjct: 118 IVITPTRELALQIFGVARELMEFH----SQTFG-----------------IVIGGANRRQ 156

Query: 337 EDXXXXXXXXXXXXRYQIIISTPGKLSSLLSEYNNKYFNTNELKYFVLDEGDKLLEDSYI 396
           E                ++I+TPG+L   L   N K F    LK  ++DE D++LE  + 
Sbjct: 157 EAEKLMKGV-------NMLIATPGRLLDHLQ--NTKGFVFKNLKALIIDEADRILEIGFE 207

Query: 397 RYMENIIKNIQAYDYTTCICSATCLQEENVYNLFQVKKKNFIKCINTNNQDNSSTVINTY 456
             M  IIK +   D  + + SAT  Q   V +L ++  +     IN   + ++ST     
Sbjct: 208 DEMRQIIKILPNEDRQSMLFSAT--QTTKVEDLARISLRPGPLFINVVPETDNSTA---- 261

Query: 457 QMPDRIQNYYIILRNIDKALFLFKFLNTMVNDNETVIVFFPTCLCVEFFFHL 508
              D ++  Y++  +  + L LF FL    N  + +IVF  +C  V+++  L
Sbjct: 262 ---DGLEQGYVVCDSDKRFLLLFSFLKR--NQKKKIIVFLSSCNSVKYYAEL 308

 Score = 60.5 bits (145), Expect = 3e-13
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 21/124 (16%)

Query: 593 CYMNKYIGEKKNNFNF--LKIHRKMKDKKRVATYNKIINTCVSNKGTKKKENRNINSERK 650
           C   KY  E  N  +   L++H K K +KR  T+ +  N                 +ER 
Sbjct: 299 CNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCN-----------------AERG 341

Query: 651 IIFCTDIISRGINMD-IHWVINYDAANKNMTYIHRSGRTGRFDK-TGKNIILLNKEEKEY 708
           I+ CTD+ +RG+++  + W+I +D  +    YIHR GRT R  K  GK+++ L   E  +
Sbjct: 342 ILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNELGF 401

Query: 709 IYFL 712
           + +L
Sbjct: 402 LRYL 405

 Score = 50.8 bits (120), Expect = 2e-10
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 11  FDELKLDESIIFSLYIQKYFYCANIQKKTIPPLIKKENVLLHSQTGSGKTLCFVIPILQY 70
           F+ELKL +  + ++    +    ++Q +TIPPL+   +VL  ++TGSGKTL F+IP ++ 
Sbjct: 44  FEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEL 103

Query: 71  LIHHRNKLCPND 82
           L  H  K  P +
Sbjct: 104 L--HSLKFKPRN 113

 Score = 28.1 bits (61), Expect = 0.002
 Identities = 10/42 (23%), Positives = 24/42 (57%)

Query: 830 NREIYLLSTKAFLSYIEFYKNHQLKFIFSFNKLNLTHLCYAF 871
           N  ++  +   + SY++ Y +H LK ++  +KL+L  +  ++
Sbjct: 436 NYYLHQTAKDGYRSYLQAYASHSLKTVYQIDKLDLAKVAKSY 477

 Score = 16.9 bits (32), Expect = 3.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 978 DEYDRLLNMDDIDKM 992
           DE DR+L +   D+M
Sbjct: 196 DEADRILEIGFEDEM 210
Lambda     K      H
   0.321    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 926
Number of extensions: 38
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 6
Length of query: 1041
Length of database: 505
Length adjustment: 40
Effective length of query: 1001
Effective length of database: 465
Effective search space:   465465
Effective search space used:   465465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 29 (16.3 bits)
S2: 29 (15.8 bits)