Query= PF14_0185 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) ATP-dependent
RNA helicase, putative
(1041 letters)
>YMR290C HAS1 SGDID:S000004903, Chr XIII from 851590-850073, reverse
complement, Verified ORF, "ATP-dependent RNA helicase;
localizes to both the nuclear periphery and nucleolus;
highly enriched in nuclear pore complex fractions;
constituent of 66S pre-ribosomal particles"
Length = 505
Score = 62.0 bits (149), Expect = 1e-13
Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 41/232 (17%)
Query: 277 IIITPTRELCIQIYNLINKFLFFLRFYISHTLNNNMDNNVLTKENFFINCLLFRGAVKIS 336
I+ITPTREL +QI+ + + + F S T ++ GA +
Sbjct: 118 IVITPTRELALQIFGVARELMEFH----SQTFG-----------------IVIGGANRRQ 156
Query: 337 EDXXXXXXXXXXXXRYQIIISTPGKLSSLLSEYNNKYFNTNELKYFVLDEGDKLLEDSYI 396
E ++I+TPG+L L N K F LK ++DE D++LE +
Sbjct: 157 EAEKLMKGV-------NMLIATPGRLLDHLQ--NTKGFVFKNLKALIIDEADRILEIGFE 207
Query: 397 RYMENIIKNIQAYDYTTCICSATCLQEENVYNLFQVKKKNFIKCINTNNQDNSSTVINTY 456
M IIK + D + + SAT Q V +L ++ + IN + ++ST
Sbjct: 208 DEMRQIIKILPNEDRQSMLFSAT--QTTKVEDLARISLRPGPLFINVVPETDNSTA---- 261
Query: 457 QMPDRIQNYYIILRNIDKALFLFKFLNTMVNDNETVIVFFPTCLCVEFFFHL 508
D ++ Y++ + + L LF FL N + +IVF +C V+++ L
Sbjct: 262 ---DGLEQGYVVCDSDKRFLLLFSFLKR--NQKKKIIVFLSSCNSVKYYAEL 308
Score = 60.5 bits (145), Expect = 3e-13
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 21/124 (16%)
Query: 593 CYMNKYIGEKKNNFNF--LKIHRKMKDKKRVATYNKIINTCVSNKGTKKKENRNINSERK 650
C KY E N + L++H K K +KR T+ + N +ER
Sbjct: 299 CNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCN-----------------AERG 341
Query: 651 IIFCTDIISRGINMD-IHWVINYDAANKNMTYIHRSGRTGRFDK-TGKNIILLNKEEKEY 708
I+ CTD+ +RG+++ + W+I +D + YIHR GRT R K GK+++ L E +
Sbjct: 342 ILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNELGF 401
Query: 709 IYFL 712
+ +L
Sbjct: 402 LRYL 405
Score = 50.8 bits (120), Expect = 2e-10
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 11 FDELKLDESIIFSLYIQKYFYCANIQKKTIPPLIKKENVLLHSQTGSGKTLCFVIPILQY 70
F+ELKL + + ++ + ++Q +TIPPL+ +VL ++TGSGKTL F+IP ++
Sbjct: 44 FEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEL 103
Query: 71 LIHHRNKLCPND 82
L H K P +
Sbjct: 104 L--HSLKFKPRN 113
Score = 28.1 bits (61), Expect = 0.002
Identities = 10/42 (23%), Positives = 24/42 (57%)
Query: 830 NREIYLLSTKAFLSYIEFYKNHQLKFIFSFNKLNLTHLCYAF 871
N ++ + + SY++ Y +H LK ++ +KL+L + ++
Sbjct: 436 NYYLHQTAKDGYRSYLQAYASHSLKTVYQIDKLDLAKVAKSY 477
Score = 16.9 bits (32), Expect = 3.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 978 DEYDRLLNMDDIDKM 992
DE DR+L + D+M
Sbjct: 196 DEADRILEIGFEDEM 210
Lambda K H
0.321 0.137 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 926
Number of extensions: 38
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 6
Length of query: 1041
Length of database: 505
Length adjustment: 40
Effective length of query: 1001
Effective length of database: 465
Effective search space: 465465
Effective search space used: 465465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 29 (16.3 bits)
S2: 29 (15.8 bits)