>YER165W PAB1 SGDID:S000000967, Chr V from 510368-512101, Verified
           ORF, "Poly(A) binding protein, part of the 3'-end
           RNA-processing complex, mediates interactions between
           the 5' cap structure and the 3' mRNA poly(A) tail,
           involved in control of poly(A) tail length, interacts
           with translation factor eIF-4G"
          Length = 577

 Score = 92.0 bits (227), Expect = 5e-23
 Identities = 49/165 (29%), Positives = 89/165 (53%), Gaps = 1/165 (0%)

Query: 17  NNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVXXXXXXXXXX 76
           N+ A+LY+ +L+  V E  L ++F   G+V ++ + RD I     GY +V          
Sbjct: 35  NSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRK 94

Query: 77  AANILNMTKLFGKALRCNKATQDKRSFDVGA-NLFIGNLDDEVDEKMLFDIFSSFGQIMT 135
           A   LN T + G+  R   + +D      G+ N+FI NL  ++D K L+D FS FG I++
Sbjct: 95  AIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILS 154

Query: 136 VKVMRNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHIS 180
            K+  +E+  SKG GF+ ++   ++  AI+ +N   +  ++++++
Sbjct: 155 SKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA 199

 Score = 92.0 bits (227), Expect = 5e-23
 Identities = 59/200 (29%), Positives = 97/200 (48%), Gaps = 21/200 (10%)

Query: 22  LYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVXXXXXXXXXXAANIL 81
           LY+ N++++  +E   ELF + G + +  + +D  +G   G+GFV          A   L
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDA-DGKLKGFGFVNYEKHEDAVKAVEAL 279

Query: 82  NMTKLFGKALRCNKATQDKRSFDV-----------------GANLFIGNLDDEVDEKMLF 124
           N ++L G+ L   +A +      V                 G NLF+ NLDD VD++ L 
Sbjct: 280 NDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLE 339

Query: 125 DIFSSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFK 184
           + F+ +G I + KVMR E+  SKG GF+ +   E +  AI   N Q +  K ++++ A +
Sbjct: 340 EEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQR 399

Query: 185 KDSKGERHGTAAERFIAANK 204
           KD    R    A++  A N+
Sbjct: 400 KD---VRRSQLAQQIQARNQ 416

 Score = 75.1 bits (183), Expect = 6e-18
 Identities = 44/180 (24%), Positives = 91/180 (50%), Gaps = 8/180 (4%)

Query: 16  RNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVXXXXXXXXX 75
           +     ++I NL   +D + L + F   G++ +  I  D+ NG   G+GFV         
Sbjct: 122 KKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAK 180

Query: 76  XAANILNMTKLFGKAL----RCNKATQDKRSFDVGA---NLFIGNLDDEVDEKMLFDIFS 128
            A + LN   L G+ +      ++  +D +  +  A   NL++ N++ E  ++   ++F+
Sbjct: 181 EAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFA 240

Query: 129 SFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSK 188
            FG I++  + ++ D   KG GF++Y+  E +  A+E +N+  +  +K+++  A KK+ +
Sbjct: 241 KFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNER 300

 Score = 18.5 bits (36), Expect = 0.67
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 7/41 (17%)

Query: 272 FYPPNPHQPTSSNYLQAQVGHPTN-IPMNARGSTSFMIPPK 311
           F  PNP Q      +    G P N +P   R    + +PP+
Sbjct: 453 FNGPNPQQ------MNPMGGMPKNGMPPQFRNGPVYGVPPQ 487

Lambda     K      H
   0.315    0.132    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 418
Number of extensions: 19
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 4
Length of query: 484
Length of database: 577
Length adjustment: 35
Effective length of query: 449
Effective length of database: 542
Effective search space:   243358
Effective search space used:   243358
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 26 (14.7 bits)
S2: 26 (14.6 bits)