Query= PF14_0198 Pf Annotation|Plasmodium_falciparum_TIGR|(protein coding) glycine -- tRNA ligase, putative (879 letters)
>YBR121C GRS1 SGDID:S000000325, Chr II from 483361-481358, reverse
           complement, Verified ORF, "Cytoplasmic and mitochondrial
           glycyl-tRNA synthase that ligates glycine to the cognate
           anticodon bearing tRNA; transcription termination factor
           that may interact with the 3'-end of pre-mRNA to promote
           3'-end formation"
          Length = 667

 Score =  373 bits (957), Expect = e-107
 Identities = 213/525 (40%), Positives = 297/525 (56%), Gaps = 38/525 (7%)

Query: 341 NERLIQKIELILRKLDGMNXXXXXXXXXXYNIKSPLKND-LSEPFPFNLMFQTKIGPXXX 399
           ++ ++++ E IL K+DG +          Y+I +P+  + L  P  FNLMF+T IGP   
Sbjct: 161 DDDVVKEYEEILAKIDGYSGPELGELMEKYDIGNPVTGETLESPRAFNLMFETAIGPSGQ 220

Query: 400 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFLRPETAQGIFVNFKKLLEYNGGKTPFA 459
                                           +LRPETAQG F+NF KLLE+N  KTPFA
Sbjct: 221 LK-----------------------------GYLRPETAQGQFLNFNKLLEFNNSKTPFA 251

Query: 460 GAQLGLGFRNEISPRNGLLRVREFQMAEIEYFVNPKKKNHEKYYLFKYLMLPLYPRDNQL 519
            A +G  FRNEISPR GLLRVREF MAEIE+FV+P  K+H K+   K + L   PRD Q 
Sbjct: 252 SASIGKSFRNEISPRAGLLRVREFLMAEIEHFVDPLDKSHPKFNEIKDIKLSFLPRDVQE 311

Query: 520 TDGVVIKNMTLEEAVEKNIIANEALAYFLARTYLFLLKCGINKDGIRFRQHLKTEMAHYA 579
                    T+ EAV   ++ NE L YF+AR Y FL+K G+++  +RFRQH+  EMAHYA
Sbjct: 312 AGSTEPIVKTVGEAVASRMVDNETLGYFIARIYQFLMKIGVDESKLRFRQHMANEMAHYA 371

Query: 580 NDCWDAEILTSFGFIEVVGHADRSAYDLQHHMKYTGANLYACEKYNEPIEVEYVKMIPNK 639
            DCWD E+ TS+G+IE VG ADRSAYDL  H K T   L   +K + PIEV   ++   K
Sbjct: 372 ADCWDGELKTSYGWIECVGCADRSAYDLTVHSKKTKEKLVVRQKLDNPIEVTKWEIDLTK 431

Query: 640 AKIGHTFKSEQNKIYACLNEKSNEELLIIDEELSKNNKYILXXXXXXXXXXECKYELTRD 699
              G  F+ +  K+ + L   S ++L    E L  N K+ +          + + EL   
Sbjct: 432 KLFGPKFRKDAPKVESHLLNMSQDDLASKAELLKANGKFTI-----KVDGVDGEVELDDK 486

Query: 700 MLSFQKYKKKVQEENFIPNVIEPSFGIGRLIFCILEHSFRIRRFTDDKEERQYLSLPYKL 759
           ++  ++  K      ++P+VIEPSFGIGR+I+ + EHSF  R    +   R  LS P  +
Sbjct: 487 LVKIEQRTKVEHVREYVPSVIEPSFGIGRIIYSVFEHSFWNR---PEDNARSVLSFPPLV 543

Query: 760 APIKCSILSISNNKAFYPYIKQIQMLLNQYNISSKIDNSSVSIGKKYARTDEIGIPFAVT 819
           AP K  ++ +SN+K   P   ++  +L +  I  KID+S VSIGK+YAR DE+G PF VT
Sbjct: 544 APTKVLLVPLSNHKDLVPVHHEVAKILRKSQIPFKIDDSGVSIGKRYARNDELGTPFGVT 603

Query: 820 IDFQTLKDKTITLRERDSMLQIRISMSHLVDIINSMLHAKKNWNE 864
           IDF++ KD ++TLRERDS  Q+R S+ +++  I  + +   +W E
Sbjct: 604 IDFESAKDHSVTLRERDSTKQVRGSVENVIKAIRDITYNGASWEE 648

 Score =  122 bits (306), Expect = 7e-32
 Identities = 51/108 (47%), Positives = 82/108 (75%)

Query: 153 NRTKLENLVKRKFFYTNSFEIYGGASGLFDYGPSGCLLKSELENLWRCHFIYYDEMLEIS 212
           NR +LE++++ +FFY  +F++YGG SGL+DYGP GC  ++ + + WR HFI  ++MLE+ 
Sbjct: 16  NREQLESVLRGRFFYAPAFDLYGGVSGLYDYGPPGCAFQNNIIDAWRKHFILEEDMLEVD 75

Query: 213 GSCVTPYQVLKTSGHVDRFTDLMIRDVVTNDCYRADKYLGDFLKAKIE 260
            + +TPY+VLKTSGHVD+F+D M RD+ T + +RAD  + + L+A+++
Sbjct: 76  CTMLTPYEVLKTSGHVDKFSDWMCRDLKTGEIFRADHLVEEVLEARLK 123

 Score = 15.8 bits (29), Expect = 9.4
 Identities = 5/10 (50%), Positives = 8/10 (80%)

Query: 116 DEDLKKEFME 125
           D+D+ KE+ E
Sbjct: 161 DDDVVKEYEE 170
Lambda     K      H
   0.321    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1192
Number of extensions: 54
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 4
Length of query: 879
Length of database: 667
Length adjustment: 40
Effective length of query: 839
Effective length of database: 627
Effective search space:   526053
Effective search space used:   526053
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 29 (16.3 bits)
S2: 29 (15.8 bits)