Query= PF14_0198 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) glycine -- tRNA
ligase, putative
(879 letters)
>YBR121C GRS1 SGDID:S000000325, Chr II from 483361-481358, reverse
complement, Verified ORF, "Cytoplasmic and mitochondrial
glycyl-tRNA synthase that ligates glycine to the cognate
anticodon bearing tRNA; transcription termination factor
that may interact with the 3'-end of pre-mRNA to promote
3'-end formation"
Length = 667
Score = 373 bits (957), Expect = e-107
Identities = 213/525 (40%), Positives = 297/525 (56%), Gaps = 38/525 (7%)
Query: 341 NERLIQKIELILRKLDGMNXXXXXXXXXXYNIKSPLKND-LSEPFPFNLMFQTKIGPXXX 399
++ ++++ E IL K+DG + Y+I +P+ + L P FNLMF+T IGP
Sbjct: 161 DDDVVKEYEEILAKIDGYSGPELGELMEKYDIGNPVTGETLESPRAFNLMFETAIGPSGQ 220
Query: 400 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFLRPETAQGIFVNFKKLLEYNGGKTPFA 459
+LRPETAQG F+NF KLLE+N KTPFA
Sbjct: 221 LK-----------------------------GYLRPETAQGQFLNFNKLLEFNNSKTPFA 251
Query: 460 GAQLGLGFRNEISPRNGLLRVREFQMAEIEYFVNPKKKNHEKYYLFKYLMLPLYPRDNQL 519
A +G FRNEISPR GLLRVREF MAEIE+FV+P K+H K+ K + L PRD Q
Sbjct: 252 SASIGKSFRNEISPRAGLLRVREFLMAEIEHFVDPLDKSHPKFNEIKDIKLSFLPRDVQE 311
Query: 520 TDGVVIKNMTLEEAVEKNIIANEALAYFLARTYLFLLKCGINKDGIRFRQHLKTEMAHYA 579
T+ EAV ++ NE L YF+AR Y FL+K G+++ +RFRQH+ EMAHYA
Sbjct: 312 AGSTEPIVKTVGEAVASRMVDNETLGYFIARIYQFLMKIGVDESKLRFRQHMANEMAHYA 371
Query: 580 NDCWDAEILTSFGFIEVVGHADRSAYDLQHHMKYTGANLYACEKYNEPIEVEYVKMIPNK 639
DCWD E+ TS+G+IE VG ADRSAYDL H K T L +K + PIEV ++ K
Sbjct: 372 ADCWDGELKTSYGWIECVGCADRSAYDLTVHSKKTKEKLVVRQKLDNPIEVTKWEIDLTK 431
Query: 640 AKIGHTFKSEQNKIYACLNEKSNEELLIIDEELSKNNKYILXXXXXXXXXXECKYELTRD 699
G F+ + K+ + L S ++L E L N K+ + + + EL
Sbjct: 432 KLFGPKFRKDAPKVESHLLNMSQDDLASKAELLKANGKFTI-----KVDGVDGEVELDDK 486
Query: 700 MLSFQKYKKKVQEENFIPNVIEPSFGIGRLIFCILEHSFRIRRFTDDKEERQYLSLPYKL 759
++ ++ K ++P+VIEPSFGIGR+I+ + EHSF R + R LS P +
Sbjct: 487 LVKIEQRTKVEHVREYVPSVIEPSFGIGRIIYSVFEHSFWNR---PEDNARSVLSFPPLV 543
Query: 760 APIKCSILSISNNKAFYPYIKQIQMLLNQYNISSKIDNSSVSIGKKYARTDEIGIPFAVT 819
AP K ++ +SN+K P ++ +L + I KID+S VSIGK+YAR DE+G PF VT
Sbjct: 544 APTKVLLVPLSNHKDLVPVHHEVAKILRKSQIPFKIDDSGVSIGKRYARNDELGTPFGVT 603
Query: 820 IDFQTLKDKTITLRERDSMLQIRISMSHLVDIINSMLHAKKNWNE 864
IDF++ KD ++TLRERDS Q+R S+ +++ I + + +W E
Sbjct: 604 IDFESAKDHSVTLRERDSTKQVRGSVENVIKAIRDITYNGASWEE 648
Score = 122 bits (306), Expect = 7e-32
Identities = 51/108 (47%), Positives = 82/108 (75%)
Query: 153 NRTKLENLVKRKFFYTNSFEIYGGASGLFDYGPSGCLLKSELENLWRCHFIYYDEMLEIS 212
NR +LE++++ +FFY +F++YGG SGL+DYGP GC ++ + + WR HFI ++MLE+
Sbjct: 16 NREQLESVLRGRFFYAPAFDLYGGVSGLYDYGPPGCAFQNNIIDAWRKHFILEEDMLEVD 75
Query: 213 GSCVTPYQVLKTSGHVDRFTDLMIRDVVTNDCYRADKYLGDFLKAKIE 260
+ +TPY+VLKTSGHVD+F+D M RD+ T + +RAD + + L+A+++
Sbjct: 76 CTMLTPYEVLKTSGHVDKFSDWMCRDLKTGEIFRADHLVEEVLEARLK 123
Score = 15.8 bits (29), Expect = 9.4
Identities = 5/10 (50%), Positives = 8/10 (80%)
Query: 116 DEDLKKEFME 125
D+D+ KE+ E
Sbjct: 161 DDDVVKEYEE 170
Lambda K H
0.321 0.139 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1192
Number of extensions: 54
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 4
Length of query: 879
Length of database: 667
Length adjustment: 40
Effective length of query: 839
Effective length of database: 627
Effective search space: 526053
Effective search space used: 526053
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 29 (16.3 bits)
S2: 29 (15.8 bits)