Query= PF14_0207 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) RNA polymerase
subunit, putative
(341 letters)
>YNR003C RPC34 SGDID:S000005286, Chr XIV from 635299-634346, reverse
complement, Verified ORF, "RNA polymerase III subunit
C34; interacts with TFIIIB70 and is a key determinant in
pol III recruitment by the preinitiation complex"
Length = 317
Score = 64.3 bits (155), Expect = 4e-15
Identities = 31/100 (31%), Positives = 57/100 (57%)
Query: 104 EQVTKKLKELSDIDFLIFTKVENSQNNGIWTADLRKQTKLLIHQVQKGVKLLCENKLIKQ 163
E +K +S + L+++ +E S GIW+ ++ +T L H V K +K L + +K
Sbjct: 77 ESEAQKKATMSAEEALVYSYIEASGREGIWSKTIKARTNLHQHVVLKCLKSLESQRYVKS 136
Query: 164 VNNIHVKNRKMYILYDLEASEKVIGGSFYTDGEFNKKVVD 203
V ++ RK+Y+LY L+ S + GG ++TDGE + + ++
Sbjct: 137 VKSVKFPTRKIYMLYSLQPSVDITGGPWFTDGELDIEFIN 176
Score = 18.9 bits (37), Expect = 0.19
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 7/30 (23%)
Query: 248 KTLSYEERINIYK-------SNNDEELIYY 270
K L EE +I+ S +D+E++Y+
Sbjct: 283 KALEDEEEFSIFNYFKMFPASKHDKEVVYF 312
Lambda K H
0.320 0.137 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 205
Number of extensions: 9
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 341
Length of database: 317
Length adjustment: 28
Effective length of query: 313
Effective length of database: 289
Effective search space: 90457
Effective search space used: 90457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 23 (13.5 bits)
S2: 23 (13.5 bits)