Query= PF14_0218 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) actin, putative
(522 letters)
>YFL039C ACT1 SGDID:S000001855, Chr VI from 54695-54686,54377-53260,
reverse complement, Verified ORF, "Actin, structural
protein involved in cell polarization, endocytosis, and
other cytoskeletal functions"
Length = 375
Score = 120 bits (300), Expect = 1e-31
Identities = 67/146 (45%), Positives = 95/146 (65%), Gaps = 9/146 (6%)
Query: 379 EEFFELPDGYKINIHKYKYDIAEHLFHSIPSLNNFK--GLPQSIINCIISTDVDIRKELL 436
E+ +ELPDG I I ++ E LFH PS+ + G+ Q+ N I+ DVD+RKEL
Sbjct: 237 EKSYELPDGQVITIGNERFRAPEALFH--PSVLGLESAGIDQTTYNSIMKCDVDVRKELY 294
Query: 437 QSIVITGGSSLFPGLIERLHNSLKEKECFTQSNKFKILNMTSLVEQKYSSWLGGSILASL 496
+IV++GG+++FPG+ ER+ + S K KI+ + E+KYS W+GGSILASL
Sbjct: 295 GNIVMSGGTTMFPGIAERMQKEITALA--PSSMKVKII---APPERKYSVWIGGSILASL 349
Query: 497 GTFQQMWVSKKEYHESGHNIILDRCF 522
TFQQMW+SK+EY ESG +I+ +CF
Sbjct: 350 TTFQQMWISKQEYDESGPSIVHHKCF 375
Score = 80.1 bits (196), Expect = 1e-19
Identities = 63/234 (26%), Positives = 103/234 (44%), Gaps = 52/234 (22%)
Query: 17 DISSLVVDLGFYSCKIGHNQEDTPRIFLNSICGEREMND------EYENYM-DGSLKNIN 69
++++LV+D G CK G +D PR SI G + ++Y+ D +
Sbjct: 4 EVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRG 63
Query: 70 YKELKYPLNLYNRNENIRIKPLFYKDDNKDDIKLNADVFEKILEYSIEGIEIPKVFECTD 129
L+YP+ + I N D EKI ++
Sbjct: 64 ILTLRYPI--------------------EHGIVTNWDDMEKIWHHTF------------- 90
Query: 130 DIIMDPIKLGGLNLNFEEHPILLTEFNMHNHKIREQMTEILFEKYNIPALYFAKKAKLTS 189
L + EEHP+LLTE M+ RE+MT+I+FE +N+PA Y + +A L+
Sbjct: 91 --------YNELRVAPEEHPVLLTEAPMNPKSNREKMTQIMFETFNVPAFYVSIQAVLSL 142
Query: 190 FSLGRSTSLVIDIGYNSLDINPVYEGYVLQKNSLEYNIGGQ----YFDKLIYEQ 239
+S GR+T +V+D G + P+Y G+ L L ++ G+ Y K++ E+
Sbjct: 143 YSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGRDLTDYLMKILSER 196
Score = 18.5 bits (36), Expect = 0.46
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Query: 398 DIAEHLFHSIPSLNNFKGLPQSIINC-IISTDVDIRKELLQSIVITGGSSLFPGLIERLH 456
D + + H +P F LP +I+ + D+ + L I+ G S +
Sbjct: 154 DSGDGVTHVVPIYAGFS-LPHAILRIDLAGRDLT---DYLMKILSERGYSFSTTAEREIV 209
Query: 457 NSLKEKECFTQ---SNKFKILNMTSLVEQKY 484
+KEK C+ + + +S +E+ Y
Sbjct: 210 RDIKEKLCYVALDFEQEMQTAAQSSSIEKSY 240
Lambda K H
0.319 0.138 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 445
Number of extensions: 18
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 4
Length of query: 522
Length of database: 375
Length adjustment: 32
Effective length of query: 490
Effective length of database: 343
Effective search space: 168070
Effective search space used: 168070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 25 (14.3 bits)
S2: 25 (14.2 bits)