Query= PF14_0391 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) ribosomal
protein L1, putative
(217 letters)
>YGL135W RPL1B SGDID:S000003103, Chr VII from 254646-255299,
Verified ORF, "N-terminally acetylated protein component
of the large (60S) ribosomal subunit, nearly identical
to Rpl1Bp and has similarity to E. coli L1 and rat L10a
ribosomal proteins; rpl1a rpl1b double null mutation is
lethal"
Length = 217
Score = 203 bits (517), Expect = 2e-57
Identities = 96/217 (44%), Positives = 152/217 (70%), Gaps = 1/217 (0%)
Query: 1 MSKLNQDLLKKAISDVFEGTKQ-KKRKFVETIELQIGLKDYDTQRDKRFSGTVRLSNEVR 59
MSK+ +++ + ++ + + + KKR F+ET+ELQ+GLK+YD QRDKRFSG+++L N R
Sbjct: 1 MSKITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPR 60
Query: 60 KKLKVCILGDAVHVEEAQKLELDYMDIEAMXXXXXXXXXXXXXXXXYDAFLASQVILPQI 119
+ +CI GDA V+ A+ +D M ++ + Y+AF+AS+V++ Q+
Sbjct: 61 PNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQV 120
Query: 120 PKLLGPGLNKAGKFPSLITHNDKINDKILELKSSIKFQLKKVLCMGVPVGHANLKEEELR 179
P+LLGP L+KAGKFP+ ++HND + K+ +++S+IKFQLKKVLC+ V VG+ ++E+ L
Sbjct: 121 PRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLV 180
Query: 180 SNIVHAINFLVSLLKKNWQNIRTLHIKSTMGKPQRIY 216
+ I+ ++NF VSLLKKNWQN+ +L +KS+MG R+Y
Sbjct: 181 NQILMSVNFFVSLLKKNWQNVGSLVVKSSMGPAFRLY 217
Lambda K H
0.319 0.136 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 163
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 217
Length adjustment: 22
Effective length of query: 195
Effective length of database: 195
Effective search space: 38025
Effective search space used: 38025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 19 (11.6 bits)
S2: 19 (11.9 bits)