>YHR065C RRP3 SGDID:S000001107, Chr VIII from 229039-227534, reverse
           complement, Verified ORF, "Protein involved in rRNA
           processing; required for maturation of the 35S primary
           transcript of pre-rRNA and for cleavage leading to
           mature 18S rRNA; homologous to eIF-4a, which is a DEAD
           box RNA-dependent ATPase with helicase activity"
          Length = 501

 Score =  123 bits (309), Expect = 2e-32
 Identities = 106/424 (25%), Positives = 194/424 (45%), Gaps = 95/424 (22%)

Query: 256 FFKPTEIQSKTLEKSINDKNDIVVISKTGTGKTLTFCLPXXXXXXXXXXXXXXXXXXXXX 315
           + KPT IQSK +  ++ + +DI+ +++TG+GKT  F +P                     
Sbjct: 101 YSKPTPIQSKAIPPAL-EGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEP---------- 149

Query: 316 XFRCLILVPTRELALQILKHFNYINKYINLFISTIIGGLNLNKQKRILMKKPEILICTPG 375
            +   IL PTRELA QI + F+ +   + +  + I+GG+N+  Q R LM+KP I+I TPG
Sbjct: 150 -YYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPG 208

Query: 376 RLKYFLHLENPIKYIYQMKNIRYLVCDEIDKMIEISFMKDISYIAKHIYKSVGDKKKKLI 435
           RL    HLEN     + ++ +++LV DE D+++++ F      +   I K +  +++   
Sbjct: 209 RL--MDHLENTKG--FSLRKLKFLVMDEADRLLDMEF----GPVLDRILKIIPTQER--- 257

Query: 436 QTFLLSATLSLTV-QLQNDNMTKLLNSIIIRKDKSFIINLSNEQNVYNDNSNILPELLTL 494
            T+L SAT++  + +LQ  ++T  +   +               N Y     ++    TL
Sbjct: 258 TTYLFSATMTSKIDKLQRASLTNPVKCAV--------------SNKYQTVDTLVQ---TL 300

Query: 495 YIVKLNERDIVCKLFYLIKSYFSYDIXXXXXXXXXXXXKWEHPQDTHQNDEINKIIIFVN 554
            +V    ++    L YL+  +                                 +IIF  
Sbjct: 301 MVVPGGLKNTY--LIYLLNEFIG-----------------------------KTMIIFTR 329

Query: 555 TIKSAKQLNAIFKHLFLHNNLESSIPKKYRSNLYIKNKVNIYSIHSKQKLKERLENINKF 614
           T  +A++L+       L N LE S                  ++H      +R+ +++ F
Sbjct: 330 TKANAERLSG------LCNLLEFSAT----------------ALHGDLNQNQRMGSLDLF 367

Query: 615 SQQNHKAILFCTDVLSRGIDLDKCDLIIQLNCPISDITFVHRSGRTARNFKKGKCICFIT 674
            +   ++IL  TDV +RG+D+   D+++  + P+   +++HR GRTAR  + GK I  ++
Sbjct: 368 -KAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 426

Query: 675 ETEI 678
           + ++
Sbjct: 427 QYDL 430

 Score = 16.2 bits (30), Expect = 4.8
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 3/26 (11%)

Query: 699 DYLKSINEEDYAKINKAIECANKMIE 724
           D L S+ E+  AK   A+E   K+IE
Sbjct: 14  DELTSLAEKIRAK---ALENQKKLIE 36

 Score = 15.4 bits (28), Expect = 8.2
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query: 394 KNIRYLVCDEIDK 406
           KNI   + D +DK
Sbjct: 451 KNIILTLRDSVDK 463

Lambda     K      H
   0.319    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 689
Number of extensions: 34
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 4
Length of query: 796
Length of database: 501
Length adjustment: 38
Effective length of query: 758
Effective length of database: 463
Effective search space:   350954
Effective search space used:   350954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.7 bits)
S2: 28 (15.4 bits)