>YJL033W HCA4 SGDID:S000003570, Chr X from 383754-386066, Verified
           ORF, "Putative nucleolar DEAD box RNA helicase;
           high-copy number suppression of a U14 snoRNA processing
           mutant suggests an involvement in 18S rRNA synthesis"
          Length = 770

 Score =  125 bits (315), Expect = 7e-33
 Identities = 127/480 (26%), Positives = 213/480 (44%), Gaps = 86/480 (17%)

Query: 203 KKKELFDIERIIKNEEELEKDNNIKYKI-HCNNWNNGGKIF----ILHSVMKSLFDNAFF 257
           KK  L   +R    ++E E   N+K KI   +      K F    I    +K L +++F 
Sbjct: 3   KKNRLNTTQRKTLRQKEDEYIENLKTKIDEYDPKITKAKFFKDLPISDPTLKGLRESSFI 62

Query: 258 KPTEIQSKTLEKSINDKNDIVVISKTGTGKTLTFCLPXXXXXXXXXXXXXXXXXXXXXXF 317
           K TEIQ+ ++  S+   +D++  +KTG+GKTL F +P                       
Sbjct: 63  KLTEIQADSIPVSLQG-HDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLG------ 115

Query: 318 RCLILVPTRELALQILKHFNYINKYINLFISTIIGGLNLNKQKRILMKKPEILICTPGRL 377
             LI+ PTRELA+QI +    I  + +     +IGG ++ K +   + +  ILI TPGR+
Sbjct: 116 -ALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDV-KFELERISRINILIGTPGRI 173

Query: 378 KYFLHLENPIKYIYQMKNIRYLVCDEIDKMIEISFMKDISYIAKHIYKSVGDKKKKLIQT 437
               HL+  +       N++ LV DE D+ +++ F K +  I   +  S         QT
Sbjct: 174 --LQHLDQAVG--LNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPS--------RQT 221

Query: 438 FLLSATLSLTVQLQNDNMTKLLNSIIIRKDKSFIINLSNEQNVYNDNSNILPELLTLYIV 497
            L SAT S +V          L  + +   K+   +   + +V  + S   PE L  + +
Sbjct: 222 LLFSATQSQSV--------ADLARLSLTDYKTVGTHDVMDGSVNKEAST--PETLQQFYI 271

Query: 498 KLNERDIVCKLFYLIKSYFSYDIXXXXXXXXXXXXKWEHPQDTHQNDEINKIIIFVNTIK 557
           ++   D +  LF  IKS+                                K+I+F   + 
Sbjct: 272 EVPLADKLDILFSFIKSHLKC-----------------------------KMIVF---LS 299

Query: 558 SAKQLNAIFKHLFLHNNLESSIPKKYRSNLYIKNKVNIYSIHSKQKLKERLENINKFSQQ 617
           S+KQ++ +                 Y +   ++  +++  +H +QK + R E ++KF++ 
Sbjct: 300 SSKQVHFV-----------------YETFRKMQPGISLMHLHGRQKQRARTETLDKFNRA 342

Query: 618 NHKAILFCTDVLSRGIDLDKCDLIIQLNCPISDITFVHRSGRTARNFKKGKCICFITETE 677
             +  LF TDV++RGID    D ++Q++CP    T++HR GR AR  KKGK +  +T  E
Sbjct: 343 -QQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQE 401

 Score = 19.6 bits (39), Expect = 0.68
 Identities = 11/27 (40%), Positives = 13/27 (48%)

Query: 21  ELKKEGLISIEEAEGNNVKILSADNLN 47
           E   E  IS +E EG  V  L   NL+
Sbjct: 684 EAAMEEEISGDEEEGKTVAYLGTGNLS 710

Lambda     K      H
   0.319    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1076
Number of extensions: 44
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 4
Length of query: 796
Length of database: 770
Length adjustment: 41
Effective length of query: 755
Effective length of database: 729
Effective search space:   550395
Effective search space used:   550395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 29 (16.2 bits)
S2: 29 (15.8 bits)