>YMR290C HAS1 SGDID:S000004903, Chr XIII from 851590-850073, reverse
           complement, Verified ORF, "ATP-dependent RNA helicase;
           localizes to both the nuclear periphery and nucleolus;
           highly enriched in nuclear pore complex fractions;
           constituent of 66S pre-ribosomal particles"
          Length = 505

 Score =  124 bits (310), Expect = 2e-32
 Identities = 115/435 (26%), Positives = 189/435 (43%), Gaps = 93/435 (21%)

Query: 248 MKSLFDNAFFKPTEIQSKTLEKSINDKNDIVVISKTGTGKTLTFCLPXXXXXXXXXXXXX 307
           +K++    F   T +Q++T+   +  + D++  +KTG+GKTL F +P             
Sbjct: 54  LKAIEKMGFTTMTSVQARTIPPLLAGR-DVLGAAKTGSGKTLAFLIPAIELLHSLKFKPR 112

Query: 308 XXXXXXXXXFRCLILVPTRELALQILKHFNYINKYINLFISTIIGGLNLNKQKRILMKKP 367
                       +++ PTRELALQI      + ++ +     +IGG N  ++   LMK  
Sbjct: 113 NGTGI-------IVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLMKGV 165

Query: 368 EILICTPGRLKYFLHLENPIKYIYQMKNIRYLVCDEIDKMIEISFMKDISYIAKHIYKSV 427
            +LI TPGRL    HL+N   +++  KN++ L+ DE D+++EI F  ++  I K +    
Sbjct: 166 NMLIATPGRL--LDHLQNTKGFVF--KNLKALIIDEADRILEIGFEDEMRQIIKILPNE- 220

Query: 428 GDKKKKLIQTFLLSATLSLTVQLQNDNMTKLLNSIIIRKDKSFIINLSNEQNVYNDNSNI 487
            D+     Q+ L SAT +  V+         L  I +R    FI              N+
Sbjct: 221 -DR-----QSMLFSATQTTKVE--------DLARISLRPGPLFI--------------NV 252

Query: 488 LPELLTLYIVKLNERDIVC---KLFYLIKSYFSYDIXXXXXXXXXXXXKWEHPQDTHQND 544
           +PE        L +  +VC   K F L+ S+                          + +
Sbjct: 253 VPETDNSTADGLEQGYVVCDSDKRFLLLFSFL-------------------------KRN 287

Query: 545 EINKIIIFVNTIKSAKQLNAIFKHLFLHNNLESSIPKKYRSNLYIKNKVNIYSIHSKQKL 604
           +  KII+F+++  S K    +  ++ L                       +  +H KQK 
Sbjct: 288 QKKKIIVFLSSCNSVKYYAELLNYIDL----------------------PVLELHGKQKQ 325

Query: 605 KERLENINKFSQQNHKAILFCTDVLSRGIDLDKCDLIIQLNCPISDITFVHRSGRTARNF 664
           ++R     +F     + IL CTDV +RG+D+   D IIQ + P     ++HR GRTAR  
Sbjct: 326 QKRTNTFFEFCNA-ERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGT 384

Query: 665 K-KGKCICFITETEI 678
           K KGK + F+T  E+
Sbjct: 385 KGKGKSLMFLTPNEL 399

Lambda     K      H
   0.319    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 696
Number of extensions: 34
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 796
Length of database: 505
Length adjustment: 38
Effective length of query: 758
Effective length of database: 467
Effective search space:   353986
Effective search space used:   353986
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.7 bits)
S2: 28 (15.4 bits)