>YGL123W RPS2 SGDID:S000003091, Chr VII from 277623-278387, Verified
           ORF, "Protein component of the small (40S) subunit,
           essential for control of translational accuracy; has
           similarity to E. coli S5 and rat S2 ribosomal proteins"
          Length = 254

 Score =  268 bits (685), Expect = 9e-77
 Identities = 131/219 (59%), Positives = 162/219 (73%), Gaps = 6/219 (2%)

Query: 39  KNWVPVTKLGRLVKEGKIVSIEEIYLHSLPIKEYQIIDYFFQPNECSHPLKDDVVKIMPV 98
           K WVPVTKLGRLVK GKI +IEEI+LHSLP+KE+QIID           L+D+V+ I PV
Sbjct: 33  KGWVPVTKLGRLVKAGKITTIEEIFLHSLPVKEFQIIDTLLPG------LQDEVMNIKPV 86

Query: 99  QKQTRAGQRTRFKAFVAIGDGNGHCGLGVKCAKEVATAIRGAIISAKLSLIPVRRGYWGN 158
           QKQTRAGQRTRFKA V +GD NGH GLG+K AKEVA AIR  II AKLS+IP+RRGYWG 
Sbjct: 87  QKQTRAGQRTRFKAVVVVGDSNGHVGLGIKTAKEVAGAIRAGIIIAKLSVIPIRRGYWGT 146

Query: 159 KIGDPHTVPMKVSGKCGSVRIRLVPAPRGTQIVGAPTTKKMLNFAGIKDCFSSSCGKTKT 218
            +G PH++  K +GKCGSV +RL+PAPRG+ IV +P  KK+L  AG++D ++ S GKT+T
Sbjct: 147 NLGQPHSLATKTTGKCGSVTVRLIPAPRGSGIVASPAVKKLLQLAGVEDVYTQSNGKTRT 206

Query: 219 KGNFLRAIFNALSKTYGYLTPDLWKVTNFDKSPYEEWSD 257
             N L+A F A+  TYG+LTP+LW       SP + +SD
Sbjct: 207 LENTLKAAFVAIGNTYGFLTPNLWAEQPLPVSPLDIYSD 245

 Score = 12.7 bits (21), Expect = 8.5
 Identities = 4/7 (57%), Positives = 5/7 (71%)

Query: 99  QKQTRAG 105
           Q+Q R G
Sbjct: 7   QQQKRGG 13

Lambda     K      H
   0.319    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 237
Number of extensions: 6
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 272
Length of database: 254
Length adjustment: 25
Effective length of query: 247
Effective length of database: 229
Effective search space:    56563
Effective search space used:    56563
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 21 (12.5 bits)
S2: 21 (12.7 bits)