Query= PF14_0456 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) hypothetical
protein, conserved
(1275 letters)
>YLR129W DIP2 SGDID:S000004119, Chr XII from 399658-402489, Verified
ORF, "Nucleolar protein, specifically associated with the
U3 snoRNA, part of the large ribonucleoprotein complex
known as the small subunit (SSU) processome, required for
18S rRNA biogenesis, part of the active pre-rRNA
processing complex"
Length = 943
Score = 175 bits (443), Expect = 2e-47
Identities = 115/432 (26%), Positives = 215/432 (49%), Gaps = 44/432 (10%)
Query: 849 LSDKVSCAMYSPDGKYICIGYLNNLIEILYSDTLKLHLTLYGHSLPITCMDISKDNKILA 908
L+D + C SPD +Y+ I L+N +++ + D++K +L+LYGH LP+ +DIS D+K++
Sbjct: 530 LTDDILCVRVSPDDRYLAISLLDNTVKVFFLDSMKFYLSLYGHKLPVLSIDISFDSKMII 589
Query: 909 SSGADKFIFLWNMEYGNVNKRIHTECDVVNKIQFFNKNNNLISISRDGYIKMWDAIKFQC 968
+S ADK I +W +++G+ +K + D + ++F +++N S S+D +K WD KF+C
Sbjct: 590 TSSADKNIKIWGLDFGDCHKSLFAHQDSIMNVKFLPQSHNFFSCSKDAVVKYWDGEKFEC 649
Query: 969 ICTVDGNFGILKCLVINHNDDFFLTSGTHKSIRIWKKGEDLIFLEEERDKELNLQIEK-- 1026
I + + + L + + F ++S SIRIW++ ED +FLEEE++KEL Q E
Sbjct: 650 IQKLYAHQSEVWALAVATDGGFVVSSSHDHSIRIWEETEDQVFLEEEKEKELEEQYEDTL 709
Query: 1027 ----EAIRNDLAYPSSVEKNVLLNKAT---IKTIETIKSSXXXXXXXXXXXXXXXXXDTY 1079
E D A+ + + ++A+ +T+E++K+ + Y
Sbjct: 710 LTSLEEGNGDDAFKADASGEGVEDEASGVHKQTLESLKAGERLMEALDLGIAEIEGLEAY 769
Query: 1080 YKNLTAYEEAKGKNELPDFVQPPTKPLGRPELL--NKDPHEFIIEIMCNIKNNILNEVLI 1137
+++ ++ K + P KP G L+ NK P ++I++ + I+ + L + L+
Sbjct: 770 NRDMKLWQRKK-------LGEAPIKPQGNAVLIAVNKTPEQYIMDTLLRIRMSQLEDALM 822
Query: 1138 SLPFSYAYKLLDYIKTYLISFHFFQKIQDNYKKYLSCGNFNFYVEYSINIVLTIINIYRN 1197
+PFSY K L +I T + + K + L C N F ++++ +++ N
Sbjct: 823 VMPFSYVLKFLKFIDTVMQN-----KTLLHSHLPLICKNLFFIIKFNHKELVSQKN---- 873
Query: 1198 QFLFDNKFRFLLYELQQLILPHLKKSVDQCAFNQTTLNFLMYSMDDDELNLDHILQNNSF 1257
+ + + ++ + LK + D FN L F+ + NL H N F
Sbjct: 874 -----EELKLQINRVKTELRSALKSTEDDLGFNVQGLKFV-----KQQWNLRH---NYEF 920
Query: 1258 INKETKKIDQQQ 1269
++ + DQQ+
Sbjct: 921 VD----EYDQQE 928
Score = 105 bits (263), Expect = 1e-26
Identities = 87/313 (27%), Positives = 151/313 (48%), Gaps = 46/313 (14%)
Query: 1 MVKSYDRYEYEDCLGIVNSKSSNCVFL-----NNNN-----IISGHDECVGIWXXXXXXX 50
MVKSY R+E G++ S ++NCV++ N+N +I+ E V IW
Sbjct: 1 MVKSYQRFEQAAAFGVIAS-NANCVWIPASSGNSNGSGPGQLITSALEDVNIWDIKTGDL 59
Query: 51 XXXLSVPFLPPYYFFTY-----HVTYICLNDVNKNIVAVGYTNGSIRLFDMEKNKILSTF 105
LS LPP TY+ + + +++AVGY +G I+++D+ +L F
Sbjct: 60 VSKLS-DGLPPGASDARGAKPAECTYLEAHK-DTDLLAVGYADGVIKVWDLMSKTVLLNF 117
Query: 106 SGHTSGICKLKFNENGNYLCSCSKDTNIILWDIINDKGVFKLEGHTNVVTDIEFLQRKND 165
+GH + I L+F+ G L S SKD+NII+WD++ + G++KL H + +T F + D
Sbjct: 118 NGHKAAITLLQFDGTGTRLISGSKDSNIIVWDLVGEVGLYKLRSHKDSITG--FWCQGED 175
Query: 166 YLDDFLDNNILISVSKDCLIKVWELNIQTCVQTIVDCEEEITSLIINQTNTRLIVACNSF 225
+ LIS SKD +IK+W+L C++T + E L + + + + +S
Sbjct: 176 W---------LISTSKDGMIKLWDLKTHQCIETHIAHTGECWGLAV-KDDLLITTGTDSQ 225
Query: 226 LKIYKINLYSNHI--------IKDTYNTNSKIYITFLANIKRPTNCRIQNMKMIFFIDNE 277
+KI+K+++ ++ + I + + + I F+ N T+ F+I N
Sbjct: 226 VKIWKLDIENDKMGGKLTEMGIFEKQSKQRGLKIEFITNSSDKTS--------FFYIQNA 277
Query: 278 DIYNYPFELEDEK 290
D F + E+
Sbjct: 278 DKTIETFRIRKEE 290
Score = 64.3 bits (155), Expect = 5e-14
Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 29/211 (13%)
Query: 861 DGKYICIGYLNNLIEI--LYSDTLKLHLTLYGHSLPITCMDISKDNKILASSGADKFIFL 918
D + +GY + +I++ L S T+ L+ GH IT + L S D I +
Sbjct: 90 DTDLLAVGYADGVIKVWDLMSKTVLLNFN--GHKAAITLLQFDGTGTRLISGSKDSNIIV 147
Query: 919 WNM--EYGNVNKRIHTECDVVNKIQFFNKNNN-LISISRDGYIKMWDAIKFQCICTVDGN 975
W++ E G R H + + F+ + + LIS S+DG IK+WD QCI T +
Sbjct: 148 WDLVGEVGLYKLRSHKD----SITGFWCQGEDWLISTSKDGMIKLWDLKTHQCIETHIAH 203
Query: 976 FGILKCLVINHNDDFFLTSGTHKSIRIWKKGEDLIFLEEERDK------ELNL---QIEK 1026
G +C + DD +T+GT ++IWK L+ E DK E+ + Q ++
Sbjct: 204 TG--ECWGLAVKDDLLITTGTDSQVKIWK-------LDIENDKMGGKLTEMGIFEKQSKQ 254
Query: 1027 EAIRNDLAYPSSVEKNVLLNKATIKTIETIK 1057
++ + SS + + + KTIET +
Sbjct: 255 RGLKIEFITNSSDKTSFFYIQNADKTIETFR 285
Score = 45.4 bits (106), Expect = 2e-08
Identities = 24/130 (18%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 82 VAVGYTNGSIRLFDMEKNKILSTFSGHTSGICKLKFNENGNYLCSCSKDTNIILWDIIND 141
+A+ + ++++F ++ K + GH + + + + + + S D NI +W +
Sbjct: 546 LAISLLDNTVKVFFLDSMKFYLSLYGHKLPVLSIDISFDSKMIITSSADKNIKIWGLDFG 605
Query: 142 KGVFKLEGHTNVVTDIEFLQRKNDYLDDFLDNNILISVSKDCLIKVWELNIQTCVQTIVD 201
L H + + +++FL + +++ S SKD ++K W+ C+Q +
Sbjct: 606 DCHKSLFAHQDSIMNVKFLPQSHNF----------FSCSKDAVVKYWDGEKFECIQKLYA 655
Query: 202 CEEEITSLII 211
+ E+ +L +
Sbjct: 656 HQSEVWALAV 665
Score = 39.7 bits (91), Expect = 1e-06
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 81 IVAVGYTNGSIRLFDMEKNKILSTF-SGHTSGICKLKFNENGNYLCSCSKDTNIILWDII 139
+V +G NG ++LFD+ + +L T H + I L +G L + S D + WD
Sbjct: 444 LVILGTRNGELQLFDLASSSLLDTIEDAHDAAIWSLDLTSDGKRLVTGSADKTVKFWD-- 501
Query: 140 NDKGVFKLEGHTNVVTDIEF---LQRKNDYLDDFLDNNILISVSKD 182
FK+E T +F L+ +D + D+ + + VS D
Sbjct: 502 -----FKVENSLVPGTKNKFLPVLKLHHDTTLELTDDILCVRVSPD 542
Score = 38.9 bits (89), Expect = 2e-06
Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 7/125 (5%)
Query: 882 LKLH-LTLYGHSLPITCMDISKDNKILASSGADKFIFLWNMEYGNVNKRIHT-ECDVVNK 939
LK H + L G + +DIS DNK+LA++ ++ + +WN++ +K I T EC
Sbjct: 380 LKTHTIELQGQRTDVRSIDISDDNKLLATA-SNGSLKIWNIK---THKCIRTFECGYALT 435
Query: 940 IQFFNKNNNLISISRDGYIKMWDAIKFQCICTV-DGNFGILKCLVINHNDDFFLTSGTHK 998
+F +I +R+G ++++D + T+ D + + L + + +T K
Sbjct: 436 CKFLPGGLLVILGTRNGELQLFDLASSSLLDTIEDAHDAAIWSLDLTSDGKRLVTGSADK 495
Query: 999 SIRIW 1003
+++ W
Sbjct: 496 TVKFW 500
Score = 35.8 bits (81), Expect = 2e-05
Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 13/128 (10%)
Query: 78 NKNIVAVGYTNGSIRLFDMEKNKILSTFSGHTSGICKLKFNENGNYLCSCSKDTNIILWD 137
+ ++ + +I+++ ++ + H I +KF + SCSKD + WD
Sbjct: 584 DSKMIITSSADKNIKIWGLDFGDCHKSLFAHQDSIMNVKFLPQSHNFFSCSKDAVVKYWD 643
Query: 138 IINDKGVFKLEGHTNVVTDIEFLQRKNDYLDDFLDNNILISVSKDCLIKVWELNIQTCVQ 197
+ + KL H + V + D ++S S D I++WE +T Q
Sbjct: 644 GEKFECIQKLYAHQSEVWALAVA----------TDGGFVVSSSHDHSIRIWE---ETEDQ 690
Query: 198 TIVDCEEE 205
++ E+E
Sbjct: 691 VFLEEEKE 698
Score = 33.1 bits (74), Expect = 1e-04
Identities = 46/196 (23%), Positives = 89/196 (45%), Gaps = 24/196 (12%)
Query: 827 SNDVRKIENCEIFMFKEIDCYHLSDKVSCAMYSPDGKYICIGYLNNLIEILYSDTLKLHL 886
SN KI N I K I + ++C + P G + +G N +++ + L
Sbjct: 410 SNGSLKIWN--IKTHKCIRTFECGYALTCK-FLPGGLLVILGTRNGELQLFDLASSSLLD 466
Query: 887 TLY-GHSLPITCMDISKDNKILASSGADKFIFLWNMEY------GNVNK-----RIH--T 932
T+ H I +D++ D K L + ADK + W+ + G NK ++H T
Sbjct: 467 TIEDAHDAAIWSLDLTSDGKRLVTGSADKTVKFWDFKVENSLVPGTKNKFLPVLKLHHDT 526
Query: 933 ECDVVNKIQF--FNKNNNLISIS-RDGYIKMW--DAIKFQCICTVDGNFGILKCLVINHN 987
++ + I + ++ ++IS D +K++ D++KF ++ G+ + + I+ +
Sbjct: 527 TLELTDDILCVRVSPDDRYLAISLLDNTVKVFFLDSMKF--YLSLYGHKLPVLSIDISFD 584
Query: 988 DDFFLTSGTHKSIRIW 1003
+TS K+I+IW
Sbjct: 585 SKMIITSSADKNIKIW 600
Score = 30.4 bits (67), Expect = 8e-04
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 17/119 (14%)
Query: 98 KNKILSTFSGH-------TSGICKLKFNENGNYLCSCSKDTNIILWDIINDKGVFKLEGH 150
KNK L H T I ++ + + YL D + ++ + + K L GH
Sbjct: 513 KNKFLPVLKLHHDTTLELTDDILCVRVSPDDRYLAISLLDNTVKVFFLDSMKFYLSLYGH 572
Query: 151 TNVVTDIEFLQRKNDYLDDFLDNNILISVSKDCLIKVWELNIQTCVQTIVDCEEEITSL 209
V I D D+ ++I+ S D IK+W L+ C +++ ++ I ++
Sbjct: 573 KLPVLSI----------DISFDSKMIITSSADKNIKIWGLDFGDCHKSLFAHQDSIMNV 621
Score = 29.6 bits (65), Expect = 0.001
Identities = 25/126 (19%), Positives = 58/126 (46%), Gaps = 15/126 (11%)
Query: 69 VTYICLNDVNKNIVAVGYTNGSIRLFDMEKNKILSTFSGHTSGICKLKFNENGNYLCSCS 128
V I ++D NK + +NGS+++++++ +K + TF + C KF G + +
Sbjct: 394 VRSIDISDDNKLLATA--SNGSLKIWNIKTHKCIRTFECGYALTC--KFLPGGLLVILGT 449
Query: 129 KDTNIILWDIINDKGVFKLE-GHTNVVTDIEFLQRKNDYLDDFLDNNILISVSKDCLIKV 187
++ + L+D+ + + +E H + ++ D L++ S D +K
Sbjct: 450 RNGELQLFDLASSSLLDTIEDAHDAAIWSLDLTS----------DGKRLVTGSADKTVKF 499
Query: 188 WELNIQ 193
W+ ++
Sbjct: 500 WDFKVE 505
Score = 26.9 bits (58), Expect = 0.009
Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 169 DFLDNNILISVSKDCLIKVWELNIQTCVQTIVDCEEEIT 207
D D+N L++ + + +K+W + C++T +C +T
Sbjct: 398 DISDDNKLLATASNGSLKIWNIKTHKCIRTF-ECGYALT 435
Score = 24.6 bits (52), Expect = 0.042
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 670 FCNNDESLIISDECGYLYLYELKNIELKYTYKAHANKIINLSKK 713
+C ++ LI + + G + L++LK + T+ AH + L+ K
Sbjct: 170 WCQGEDWLISTSKDGMIKLWDLKTHQCIETHIAHTGECWGLAVK 213
Score = 18.5 bits (36), Expect = 3.0
Identities = 36/185 (19%), Positives = 74/185 (40%), Gaps = 24/185 (12%)
Query: 141 DKGVFKLEGHTNVVTDIEFLQRK--NDYLDDFLDNNILISVSK-------DCLIKVWELN 191
D G+ ++EG D++ QRK + N +LI+V+K D L+++
Sbjct: 757 DLGIAEIEGLEAYNRDMKLWQRKKLGEAPIKPQGNAVLIAVNKTPEQYIMDTLLRIRMSQ 816
Query: 192 IQTCVQT-----IVDCEEEITSLIINQT--NTRLIVACNSFLKIYKIN-----LYSNHII 239
++ + ++ + I +++ N+T ++ L + C + I K N N +
Sbjct: 817 LEDALMVMPFSYVLKFLKFIDTVMQNKTLLHSHLPLICKNLFFIIKFNHKELVSQKNEEL 876
Query: 240 KDTYNTNSKIYITFLANIKRPTNCRIQNMKMIFFIDNEDIYNYPFELEDEKSDNLLYSNP 299
K N + L + + +Q +K F+ + + +E DE SN
Sbjct: 877 KLQINRVKTELRSALKSTEDDLGFNVQGLK---FVKQQWNLRHNYEFVDEYDQQEKESNS 933
Query: 300 NNQKV 304
++V
Sbjct: 934 ARKRV 938
Score = 17.7 bits (34), Expect = 5.2
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 32 IISGHDECVGIW 43
+ S HD + IW
Sbjct: 673 VSSSHDHSIRIW 684
Score = 16.9 bits (32), Expect = 8.8
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 818 DTYNKYYDDSNDVRK 832
D Y++ +SN RK
Sbjct: 922 DEYDQQEKESNSARK 936
Lambda K H
0.320 0.138 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2454
Number of extensions: 138
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 16
Length of query: 1275
Length of database: 943
Length adjustment: 46
Effective length of query: 1229
Effective length of database: 897
Effective search space: 1102413
Effective search space used: 1102413
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 32 (17.6 bits)
S2: 32 (16.9 bits)