Query= PF14_0456 Pf Annotation|Plasmodium_falciparum_TIGR|(protein coding) hypothetical protein, conserved (1275 letters)
>YLR129W DIP2 SGDID:S000004119, Chr XII from 399658-402489, Verified
            ORF, "Nucleolar protein, specifically associated with the
            U3 snoRNA, part of the large ribonucleoprotein complex
            known as the small subunit (SSU) processome, required for
            18S rRNA biogenesis, part of the active pre-rRNA
            processing complex"
          Length = 943

 Score =  175 bits (443), Expect = 2e-47
 Identities = 115/432 (26%), Positives = 215/432 (49%), Gaps = 44/432 (10%)

Query: 849  LSDKVSCAMYSPDGKYICIGYLNNLIEILYSDTLKLHLTLYGHSLPITCMDISKDNKILA 908
            L+D + C   SPD +Y+ I  L+N +++ + D++K +L+LYGH LP+  +DIS D+K++ 
Sbjct: 530  LTDDILCVRVSPDDRYLAISLLDNTVKVFFLDSMKFYLSLYGHKLPVLSIDISFDSKMII 589

Query: 909  SSGADKFIFLWNMEYGNVNKRIHTECDVVNKIQFFNKNNNLISISRDGYIKMWDAIKFQC 968
            +S ADK I +W +++G+ +K +    D +  ++F  +++N  S S+D  +K WD  KF+C
Sbjct: 590  TSSADKNIKIWGLDFGDCHKSLFAHQDSIMNVKFLPQSHNFFSCSKDAVVKYWDGEKFEC 649

Query: 969  ICTVDGNFGILKCLVINHNDDFFLTSGTHKSIRIWKKGEDLIFLEEERDKELNLQIEK-- 1026
            I  +  +   +  L +  +  F ++S    SIRIW++ ED +FLEEE++KEL  Q E   
Sbjct: 650  IQKLYAHQSEVWALAVATDGGFVVSSSHDHSIRIWEETEDQVFLEEEKEKELEEQYEDTL 709

Query: 1027 ----EAIRNDLAYPSSVEKNVLLNKAT---IKTIETIKSSXXXXXXXXXXXXXXXXXDTY 1079
                E    D A+ +      + ++A+    +T+E++K+                  + Y
Sbjct: 710  LTSLEEGNGDDAFKADASGEGVEDEASGVHKQTLESLKAGERLMEALDLGIAEIEGLEAY 769

Query: 1080 YKNLTAYEEAKGKNELPDFVQPPTKPLGRPELL--NKDPHEFIIEIMCNIKNNILNEVLI 1137
             +++  ++  K         + P KP G   L+  NK P ++I++ +  I+ + L + L+
Sbjct: 770  NRDMKLWQRKK-------LGEAPIKPQGNAVLIAVNKTPEQYIMDTLLRIRMSQLEDALM 822

Query: 1138 SLPFSYAYKLLDYIKTYLISFHFFQKIQDNYKKYLSCGNFNFYVEYSINIVLTIINIYRN 1197
             +PFSY  K L +I T + +     K   +    L C N  F ++++   +++  N    
Sbjct: 823  VMPFSYVLKFLKFIDTVMQN-----KTLLHSHLPLICKNLFFIIKFNHKELVSQKN---- 873

Query: 1198 QFLFDNKFRFLLYELQQLILPHLKKSVDQCAFNQTTLNFLMYSMDDDELNLDHILQNNSF 1257
                  + +  +  ++  +   LK + D   FN   L F+       + NL H   N  F
Sbjct: 874  -----EELKLQINRVKTELRSALKSTEDDLGFNVQGLKFV-----KQQWNLRH---NYEF 920

Query: 1258 INKETKKIDQQQ 1269
            ++    + DQQ+
Sbjct: 921  VD----EYDQQE 928

 Score =  105 bits (263), Expect = 1e-26
 Identities = 87/313 (27%), Positives = 151/313 (48%), Gaps = 46/313 (14%)

Query: 1   MVKSYDRYEYEDCLGIVNSKSSNCVFL-----NNNN-----IISGHDECVGIWXXXXXXX 50
           MVKSY R+E     G++ S ++NCV++     N+N      +I+   E V IW       
Sbjct: 1   MVKSYQRFEQAAAFGVIAS-NANCVWIPASSGNSNGSGPGQLITSALEDVNIWDIKTGDL 59

Query: 51  XXXLSVPFLPPYYFFTY-----HVTYICLNDVNKNIVAVGYTNGSIRLFDMEKNKILSTF 105
              LS   LPP             TY+  +  + +++AVGY +G I+++D+    +L  F
Sbjct: 60  VSKLS-DGLPPGASDARGAKPAECTYLEAHK-DTDLLAVGYADGVIKVWDLMSKTVLLNF 117

Query: 106 SGHTSGICKLKFNENGNYLCSCSKDTNIILWDIINDKGVFKLEGHTNVVTDIEFLQRKND 165
           +GH + I  L+F+  G  L S SKD+NII+WD++ + G++KL  H + +T   F  +  D
Sbjct: 118 NGHKAAITLLQFDGTGTRLISGSKDSNIIVWDLVGEVGLYKLRSHKDSITG--FWCQGED 175

Query: 166 YLDDFLDNNILISVSKDCLIKVWELNIQTCVQTIVDCEEEITSLIINQTNTRLIVACNSF 225
           +         LIS SKD +IK+W+L    C++T +    E   L + + +  +    +S 
Sbjct: 176 W---------LISTSKDGMIKLWDLKTHQCIETHIAHTGECWGLAV-KDDLLITTGTDSQ 225

Query: 226 LKIYKINLYSNHI--------IKDTYNTNSKIYITFLANIKRPTNCRIQNMKMIFFIDNE 277
           +KI+K+++ ++ +        I +  +    + I F+ N    T+         F+I N 
Sbjct: 226 VKIWKLDIENDKMGGKLTEMGIFEKQSKQRGLKIEFITNSSDKTS--------FFYIQNA 277

Query: 278 DIYNYPFELEDEK 290
           D     F +  E+
Sbjct: 278 DKTIETFRIRKEE 290

 Score = 64.3 bits (155), Expect = 5e-14
 Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 29/211 (13%)

Query: 861  DGKYICIGYLNNLIEI--LYSDTLKLHLTLYGHSLPITCMDISKDNKILASSGADKFIFL 918
            D   + +GY + +I++  L S T+ L+    GH   IT +        L S   D  I +
Sbjct: 90   DTDLLAVGYADGVIKVWDLMSKTVLLNFN--GHKAAITLLQFDGTGTRLISGSKDSNIIV 147

Query: 919  WNM--EYGNVNKRIHTECDVVNKIQFFNKNNN-LISISRDGYIKMWDAIKFQCICTVDGN 975
            W++  E G    R H +    +   F+ +  + LIS S+DG IK+WD    QCI T   +
Sbjct: 148  WDLVGEVGLYKLRSHKD----SITGFWCQGEDWLISTSKDGMIKLWDLKTHQCIETHIAH 203

Query: 976  FGILKCLVINHNDDFFLTSGTHKSIRIWKKGEDLIFLEEERDK------ELNL---QIEK 1026
             G  +C  +   DD  +T+GT   ++IWK       L+ E DK      E+ +   Q ++
Sbjct: 204  TG--ECWGLAVKDDLLITTGTDSQVKIWK-------LDIENDKMGGKLTEMGIFEKQSKQ 254

Query: 1027 EAIRNDLAYPSSVEKNVLLNKATIKTIETIK 1057
              ++ +    SS + +    +   KTIET +
Sbjct: 255  RGLKIEFITNSSDKTSFFYIQNADKTIETFR 285

 Score = 45.4 bits (106), Expect = 2e-08
 Identities = 24/130 (18%), Positives = 60/130 (46%), Gaps = 10/130 (7%)

Query: 82  VAVGYTNGSIRLFDMEKNKILSTFSGHTSGICKLKFNENGNYLCSCSKDTNIILWDIIND 141
           +A+   + ++++F ++  K   +  GH   +  +  + +   + + S D NI +W +   
Sbjct: 546 LAISLLDNTVKVFFLDSMKFYLSLYGHKLPVLSIDISFDSKMIITSSADKNIKIWGLDFG 605

Query: 142 KGVFKLEGHTNVVTDIEFLQRKNDYLDDFLDNNILISVSKDCLIKVWELNIQTCVQTIVD 201
                L  H + + +++FL + +++           S SKD ++K W+     C+Q +  
Sbjct: 606 DCHKSLFAHQDSIMNVKFLPQSHNF----------FSCSKDAVVKYWDGEKFECIQKLYA 655

Query: 202 CEEEITSLII 211
            + E+ +L +
Sbjct: 656 HQSEVWALAV 665

 Score = 39.7 bits (91), Expect = 1e-06
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 11/106 (10%)

Query: 81  IVAVGYTNGSIRLFDMEKNKILSTF-SGHTSGICKLKFNENGNYLCSCSKDTNIILWDII 139
           +V +G  NG ++LFD+  + +L T    H + I  L    +G  L + S D  +  WD  
Sbjct: 444 LVILGTRNGELQLFDLASSSLLDTIEDAHDAAIWSLDLTSDGKRLVTGSADKTVKFWD-- 501

Query: 140 NDKGVFKLEGHTNVVTDIEF---LQRKNDYLDDFLDNNILISVSKD 182
                FK+E      T  +F   L+  +D   +  D+ + + VS D
Sbjct: 502 -----FKVENSLVPGTKNKFLPVLKLHHDTTLELTDDILCVRVSPD 542

 Score = 38.9 bits (89), Expect = 2e-06
 Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 7/125 (5%)

Query: 882  LKLH-LTLYGHSLPITCMDISKDNKILASSGADKFIFLWNMEYGNVNKRIHT-ECDVVNK 939
            LK H + L G    +  +DIS DNK+LA++ ++  + +WN++    +K I T EC     
Sbjct: 380  LKTHTIELQGQRTDVRSIDISDDNKLLATA-SNGSLKIWNIK---THKCIRTFECGYALT 435

Query: 940  IQFFNKNNNLISISRDGYIKMWDAIKFQCICTV-DGNFGILKCLVINHNDDFFLTSGTHK 998
             +F      +I  +R+G ++++D      + T+ D +   +  L +  +    +T    K
Sbjct: 436  CKFLPGGLLVILGTRNGELQLFDLASSSLLDTIEDAHDAAIWSLDLTSDGKRLVTGSADK 495

Query: 999  SIRIW 1003
            +++ W
Sbjct: 496  TVKFW 500

 Score = 35.8 bits (81), Expect = 2e-05
 Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 13/128 (10%)

Query: 78  NKNIVAVGYTNGSIRLFDMEKNKILSTFSGHTSGICKLKFNENGNYLCSCSKDTNIILWD 137
           +  ++     + +I+++ ++      +   H   I  +KF    +   SCSKD  +  WD
Sbjct: 584 DSKMIITSSADKNIKIWGLDFGDCHKSLFAHQDSIMNVKFLPQSHNFFSCSKDAVVKYWD 643

Query: 138 IINDKGVFKLEGHTNVVTDIEFLQRKNDYLDDFLDNNILISVSKDCLIKVWELNIQTCVQ 197
               + + KL  H + V  +              D   ++S S D  I++WE   +T  Q
Sbjct: 644 GEKFECIQKLYAHQSEVWALAVA----------TDGGFVVSSSHDHSIRIWE---ETEDQ 690

Query: 198 TIVDCEEE 205
             ++ E+E
Sbjct: 691 VFLEEEKE 698

 Score = 33.1 bits (74), Expect = 1e-04
 Identities = 46/196 (23%), Positives = 89/196 (45%), Gaps = 24/196 (12%)

Query: 827  SNDVRKIENCEIFMFKEIDCYHLSDKVSCAMYSPDGKYICIGYLNNLIEILYSDTLKLHL 886
            SN   KI N  I   K I  +     ++C  + P G  + +G  N  +++    +  L  
Sbjct: 410  SNGSLKIWN--IKTHKCIRTFECGYALTCK-FLPGGLLVILGTRNGELQLFDLASSSLLD 466

Query: 887  TLY-GHSLPITCMDISKDNKILASSGADKFIFLWNMEY------GNVNK-----RIH--T 932
            T+   H   I  +D++ D K L +  ADK +  W+ +       G  NK     ++H  T
Sbjct: 467  TIEDAHDAAIWSLDLTSDGKRLVTGSADKTVKFWDFKVENSLVPGTKNKFLPVLKLHHDT 526

Query: 933  ECDVVNKIQF--FNKNNNLISIS-RDGYIKMW--DAIKFQCICTVDGNFGILKCLVINHN 987
              ++ + I     + ++  ++IS  D  +K++  D++KF    ++ G+   +  + I+ +
Sbjct: 527  TLELTDDILCVRVSPDDRYLAISLLDNTVKVFFLDSMKF--YLSLYGHKLPVLSIDISFD 584

Query: 988  DDFFLTSGTHKSIRIW 1003
                +TS   K+I+IW
Sbjct: 585  SKMIITSSADKNIKIW 600

 Score = 30.4 bits (67), Expect = 8e-04
 Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 17/119 (14%)

Query: 98  KNKILSTFSGH-------TSGICKLKFNENGNYLCSCSKDTNIILWDIINDKGVFKLEGH 150
           KNK L     H       T  I  ++ + +  YL     D  + ++ + + K    L GH
Sbjct: 513 KNKFLPVLKLHHDTTLELTDDILCVRVSPDDRYLAISLLDNTVKVFFLDSMKFYLSLYGH 572

Query: 151 TNVVTDIEFLQRKNDYLDDFLDNNILISVSKDCLIKVWELNIQTCVQTIVDCEEEITSL 209
              V  I          D   D+ ++I+ S D  IK+W L+   C +++   ++ I ++
Sbjct: 573 KLPVLSI----------DISFDSKMIITSSADKNIKIWGLDFGDCHKSLFAHQDSIMNV 621

 Score = 29.6 bits (65), Expect = 0.001
 Identities = 25/126 (19%), Positives = 58/126 (46%), Gaps = 15/126 (11%)

Query: 69  VTYICLNDVNKNIVAVGYTNGSIRLFDMEKNKILSTFSGHTSGICKLKFNENGNYLCSCS 128
           V  I ++D NK +     +NGS+++++++ +K + TF    +  C  KF   G  +   +
Sbjct: 394 VRSIDISDDNKLLATA--SNGSLKIWNIKTHKCIRTFECGYALTC--KFLPGGLLVILGT 449

Query: 129 KDTNIILWDIINDKGVFKLE-GHTNVVTDIEFLQRKNDYLDDFLDNNILISVSKDCLIKV 187
           ++  + L+D+ +   +  +E  H   +  ++             D   L++ S D  +K 
Sbjct: 450 RNGELQLFDLASSSLLDTIEDAHDAAIWSLDLTS----------DGKRLVTGSADKTVKF 499

Query: 188 WELNIQ 193
           W+  ++
Sbjct: 500 WDFKVE 505

 Score = 26.9 bits (58), Expect = 0.009
 Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 169 DFLDNNILISVSKDCLIKVWELNIQTCVQTIVDCEEEIT 207
           D  D+N L++ + +  +K+W +    C++T  +C   +T
Sbjct: 398 DISDDNKLLATASNGSLKIWNIKTHKCIRTF-ECGYALT 435

 Score = 24.6 bits (52), Expect = 0.042
 Identities = 12/44 (27%), Positives = 24/44 (54%)

Query: 670 FCNNDESLIISDECGYLYLYELKNIELKYTYKAHANKIINLSKK 713
           +C  ++ LI + + G + L++LK  +   T+ AH  +   L+ K
Sbjct: 170 WCQGEDWLISTSKDGMIKLWDLKTHQCIETHIAHTGECWGLAVK 213

 Score = 18.5 bits (36), Expect = 3.0
 Identities = 36/185 (19%), Positives = 74/185 (40%), Gaps = 24/185 (12%)

Query: 141 DKGVFKLEGHTNVVTDIEFLQRK--NDYLDDFLDNNILISVSK-------DCLIKVWELN 191
           D G+ ++EG      D++  QRK   +       N +LI+V+K       D L+++    
Sbjct: 757 DLGIAEIEGLEAYNRDMKLWQRKKLGEAPIKPQGNAVLIAVNKTPEQYIMDTLLRIRMSQ 816

Query: 192 IQTCVQT-----IVDCEEEITSLIINQT--NTRLIVACNSFLKIYKIN-----LYSNHII 239
           ++  +       ++   + I +++ N+T  ++ L + C +   I K N        N  +
Sbjct: 817 LEDALMVMPFSYVLKFLKFIDTVMQNKTLLHSHLPLICKNLFFIIKFNHKELVSQKNEEL 876

Query: 240 KDTYNTNSKIYITFLANIKRPTNCRIQNMKMIFFIDNEDIYNYPFELEDEKSDNLLYSNP 299
           K   N       + L + +      +Q +K   F+  +    + +E  DE       SN 
Sbjct: 877 KLQINRVKTELRSALKSTEDDLGFNVQGLK---FVKQQWNLRHNYEFVDEYDQQEKESNS 933

Query: 300 NNQKV 304
             ++V
Sbjct: 934 ARKRV 938

 Score = 17.7 bits (34), Expect = 5.2
 Identities = 5/12 (41%), Positives = 7/12 (58%)

Query: 32  IISGHDECVGIW 43
           + S HD  + IW
Sbjct: 673 VSSSHDHSIRIW 684

 Score = 16.9 bits (32), Expect = 8.8
 Identities = 6/15 (40%), Positives = 9/15 (60%)

Query: 818 DTYNKYYDDSNDVRK 832
           D Y++   +SN  RK
Sbjct: 922 DEYDQQEKESNSARK 936
Lambda     K      H
   0.320    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2454
Number of extensions: 138
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 16
Length of query: 1275
Length of database: 943
Length adjustment: 46
Effective length of query: 1229
Effective length of database: 897
Effective search space:  1102413
Effective search space used:  1102413
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 32 (17.6 bits)
S2: 32 (16.9 bits)