Query= PF14_0473 Pf Annotation|Plasmodium_falciparum_TIGR|(protein coding) 3'-5' exonuclease, putative (1136 letters)
>YOR001W RRP6 SGDID:S000005527, Chr XV from 326833-329034, Verified
           ORF, "Exonuclease component of the nuclear exosome;
           contributes to the quality-control system that retains
           and degrades aberrant mRNAs in the nucleus"
          Length = 733

 Score = 70.9 bits (172), Expect = 4e-16
 Identities = 56/227 (24%), Positives = 109/227 (48%), Gaps = 22/227 (9%)

Query: 496 HPYKYEIENIIKEYRNDNNNVTISNFLEINIEL-KKLGDINKKAYKIIDNKNDLINMINN 554
           HPY+YEI++  +EY  +         L+I  E+  K  D +   +  +D   +L +M+ +
Sbjct: 181 HPYEYEIDH--QEYSPE--------ILQIREEIPSKSWDDSVPIW--VDTSTELESMLED 228

Query: 555 IKLNYEEKKISIMIKVNYKRTYRGFTSIIMIGTNNMNYIIDVFNMFEDLYIINDITTDPN 614
           +K     K+I++ ++ +  R+Y G   ++ I T   +Y++D   + E+L+I+N++ T+P+
Sbjct: 229 LK---NTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPS 285

Query: 615 ILKITYNAPNIINQLQKDFSIYFVNIFDIAICSXXXXXXXXXXXXXXXXXXTVLYYKNKI 674
           I+K+ + A   I  LQ+D  +Y V +FD    S                       K   
Sbjct: 286 IVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQ 345

Query: 675 LQNVLITRPIEPDMVDVIQNEFTFLYDLFDYIKIDIYFNYIFNTNKM 721
           L +  I RP+   M    + +  FL +++D ++     N +  +NK+
Sbjct: 346 LADWRI-RPLSKPMTAYARADTHFLLNIYDQLR-----NKLIESNKL 386

 Score = 26.6 bits (57), Expect = 0.008
 Identities = 17/74 (22%), Positives = 40/74 (54%), Gaps = 14/74 (18%)

Query: 47  LLNNVVDIVKLTNKITYNSLYNDDIDMLRNNN----VDIKNLQTDLLKIVYDLL-----H 97
           LL+ V+++V+  +     SL + D+D  +N +     D+K+    L  +  +++     H
Sbjct: 9   LLSRVINVVRAAS-----SLASQDVDFYKNLDRGFSKDLKSKADKLADMANEIILSIDEH 63

Query: 98  HSSNEMKQKELVNI 111
           H S E+K++++ ++
Sbjct: 64  HESFELKEEDISDL 77

 Score = 22.7 bits (47), Expect = 0.11
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 827 IVNTSYNIHACDNLIYNILY-WREELAKKLDEAP 859
           I+   YNI     ++   LY WR+ +A++ DE+P
Sbjct: 427 ILMYQYNIPPEREVLVRELYQWRDLIARRDDESP 460

 Score = 19.6 bits (39), Expect = 0.93
 Identities = 9/24 (37%), Positives = 17/24 (70%), Gaps = 1/24 (4%)

Query: 895 ENLETLLEIIIKSNIYEKEKQKKK 918
           +NL+ L+ ++ K NI +K+  K+K
Sbjct: 649 DNLDDLV-VLKKKNIQKKQPAKEK 671

 Score = 17.7 bits (34), Expect = 3.5
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 737 EIYDNQDEYHSKDEQIQTSK-DEEDTKPFMNKQHIYVNFETLKFTDISEEEKKYG 790
           + Y N D   SKD + +  K  +   +  ++    + +FE LK  DIS+    +G
Sbjct: 29  DFYKNLDRGFSKDLKSKADKLADMANEIILSIDEHHESFE-LKEEDISDLWNNFG 82

 Score = 17.3 bits (33), Expect = 4.6
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query: 814 VCNIEKTKDHIKNIVNTS 831
           +CN   +K   K + N+S
Sbjct: 552 LCNSNISKSRAKPVTNSS 569
Lambda     K      H
   0.317    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1816
Number of extensions: 89
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 6
Length of query: 1136
Length of database: 733
Length adjustment: 43
Effective length of query: 1093
Effective length of database: 690
Effective search space:   754170
Effective search space used:   754170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 31 (17.0 bits)
S2: 31 (16.5 bits)