Query= PF14_0473 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) 3'-5'
exonuclease, putative
(1136 letters)
>YOR001W RRP6 SGDID:S000005527, Chr XV from 326833-329034, Verified
ORF, "Exonuclease component of the nuclear exosome;
contributes to the quality-control system that retains
and degrades aberrant mRNAs in the nucleus"
Length = 733
Score = 70.9 bits (172), Expect = 4e-16
Identities = 56/227 (24%), Positives = 109/227 (48%), Gaps = 22/227 (9%)
Query: 496 HPYKYEIENIIKEYRNDNNNVTISNFLEINIEL-KKLGDINKKAYKIIDNKNDLINMINN 554
HPY+YEI++ +EY + L+I E+ K D + + +D +L +M+ +
Sbjct: 181 HPYEYEIDH--QEYSPE--------ILQIREEIPSKSWDDSVPIW--VDTSTELESMLED 228
Query: 555 IKLNYEEKKISIMIKVNYKRTYRGFTSIIMIGTNNMNYIIDVFNMFEDLYIINDITTDPN 614
+K K+I++ ++ + R+Y G ++ I T +Y++D + E+L+I+N++ T+P+
Sbjct: 229 LK---NTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPS 285
Query: 615 ILKITYNAPNIINQLQKDFSIYFVNIFDIAICSXXXXXXXXXXXXXXXXXXTVLYYKNKI 674
I+K+ + A I LQ+D +Y V +FD S K
Sbjct: 286 IVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQ 345
Query: 675 LQNVLITRPIEPDMVDVIQNEFTFLYDLFDYIKIDIYFNYIFNTNKM 721
L + I RP+ M + + FL +++D ++ N + +NK+
Sbjct: 346 LADWRI-RPLSKPMTAYARADTHFLLNIYDQLR-----NKLIESNKL 386
Score = 26.6 bits (57), Expect = 0.008
Identities = 17/74 (22%), Positives = 40/74 (54%), Gaps = 14/74 (18%)
Query: 47 LLNNVVDIVKLTNKITYNSLYNDDIDMLRNNN----VDIKNLQTDLLKIVYDLL-----H 97
LL+ V+++V+ + SL + D+D +N + D+K+ L + +++ H
Sbjct: 9 LLSRVINVVRAAS-----SLASQDVDFYKNLDRGFSKDLKSKADKLADMANEIILSIDEH 63
Query: 98 HSSNEMKQKELVNI 111
H S E+K++++ ++
Sbjct: 64 HESFELKEEDISDL 77
Score = 22.7 bits (47), Expect = 0.11
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 827 IVNTSYNIHACDNLIYNILY-WREELAKKLDEAP 859
I+ YNI ++ LY WR+ +A++ DE+P
Sbjct: 427 ILMYQYNIPPEREVLVRELYQWRDLIARRDDESP 460
Score = 19.6 bits (39), Expect = 0.93
Identities = 9/24 (37%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 895 ENLETLLEIIIKSNIYEKEKQKKK 918
+NL+ L+ ++ K NI +K+ K+K
Sbjct: 649 DNLDDLV-VLKKKNIQKKQPAKEK 671
Score = 17.7 bits (34), Expect = 3.5
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 737 EIYDNQDEYHSKDEQIQTSK-DEEDTKPFMNKQHIYVNFETLKFTDISEEEKKYG 790
+ Y N D SKD + + K + + ++ + +FE LK DIS+ +G
Sbjct: 29 DFYKNLDRGFSKDLKSKADKLADMANEIILSIDEHHESFE-LKEEDISDLWNNFG 82
Score = 17.3 bits (33), Expect = 4.6
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 814 VCNIEKTKDHIKNIVNTS 831
+CN +K K + N+S
Sbjct: 552 LCNSNISKSRAKPVTNSS 569
Lambda K H
0.317 0.135 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1816
Number of extensions: 89
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 6
Length of query: 1136
Length of database: 733
Length adjustment: 43
Effective length of query: 1093
Effective length of database: 690
Effective search space: 754170
Effective search space used: 754170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 31 (17.0 bits)
S2: 31 (16.5 bits)