>YDL060W TSR1 SGDID:S000002218, Chr IV from 341619-343985, Verified
            ORF, "Protein required for processing of 20S pre-rRNA in
            the cytoplasm, associates with pre-40S ribosomal
            particles"
          Length = 788

 Score = 90.1 bits (222), Expect = 5e-22
 Identities = 45/107 (42%), Positives = 62/107 (57%), Gaps = 1/107 (0%)

Query: 899  IVAHGKVVSCDCKRIIMKRISLCGKIFKIHKKKAVIRNMFYNPKDINYFKPVELHTKHGL 958
            ++ HG  ++ D  RI+ KR  L G  F+ HK    +R MF+ P+D+ +FK + L TK G 
Sbjct: 682  LIGHGTFLNADHSRILAKRAILTGHPFRFHKTVVTVRYMFFRPEDVEWFKSIPLFTKSGR 741

Query: 959  TGKIVESLGTHGKMKCIFSNVLKQHDKVFIFLYKRIYPIWFPLSWGG 1005
            +G I ESLGTHG  K  F   L   D V + LYKR++P+   L W G
Sbjct: 742  SGFIKESLGTHGYFKATFDGKLSAQDVVAMSLYKRMWPM-PSLPWNG 787

 Score = 64.3 bits (155), Expect = 3e-14
 Identities = 54/226 (23%), Positives = 110/226 (48%), Gaps = 22/226 (9%)

Query: 80  ICLLVFHEDVDILSFKKEFIKYLCEENDEHIDIDNIKLYDIYTVHSNDXXXXXXXSFVVY 139
           I ++    D+D L    + +K  C + DE I +  +    I+ VH            ++ 
Sbjct: 86  ITIVPLVNDLDPLDILYKLLK--CAD-DEGIMVQEVDSKRIFNVHIKKFKSNL--KIIIP 140

Query: 140 DIPRDIYGIIDGTKCADVVLCLFKDGSIENSCFDELGYKLLSVLKIQGVPSIIGIGYNTN 199
           D+  +   I+D  K AD V+  F    ++    +E G +++  L++QG+ S IG+  N +
Sbjct: 141 DMT-NFLNILDCAKVADFVV--FGLSGVQE-VDEEFGEQIIRALELQGIASYIGVISNLS 196

Query: 200 MSNKGSHKFVM-------RYFNSEFTMDDKIFFISENKNSDFQKLYNEITNMKIKNVSYR 252
             ++   KF +        YF   F  +++++ +   KNSD   +   +     +++++R
Sbjct: 197 AVHE-KEKFQLDVKQSLESYFKHFFPSEERVYNLE--KNSDALNVLRTLCQRLPRSINWR 253

Query: 253 EGRGYMMADSCAY---NSENDCIYIKGFIKGVGFNYHNPIHITDVG 295
           + RGY++AD   +   + ++  + I+G ++G+GFN +  +HI D G
Sbjct: 254 DNRGYVVADFVDFVETSPDSGDLVIEGTVRGIGFNANRLVHIPDFG 299

 Score = 42.7 bits (99), Expect = 1e-07
 Identities = 51/206 (24%), Positives = 82/206 (39%), Gaps = 17/206 (8%)

Query: 610 EKDSNNSDNIYICKNISARERFKKYRSLQSFRTSYVDVYE---DLPLEYSRIY---DYES 663
           ++D    D I +  + SA ER K+YR L++       V E     P E+ R+    +Y++
Sbjct: 477 KEDREFPDEIELEPSESAIERLKRYRGLKNLYNCDWQVDEKDPSSPAEWKRLLRIGNYKN 536

Query: 664 SENLIKYSRKKFVQNCKIVNGEFTLTDTYCIFVIKNDGXXXXXXXXXRNDIPVIVSSLLP 723
           ++N I    K   Q   I      +   +  F+++               +   V  LL 
Sbjct: 537 TKNRIIKETKNEAQ--AIAGDRIRMFIRFPKFLLEK--------IQDPKQLLFAVYGLLL 586

Query: 724 FERKVTVLNMEVNRTIFYSDKVESKDIFEIICGFRHFIGCPVFSEQIIKGPQSKGKYEKH 783
            E K  V+N  + R   Y   V S++   +  G R +   P+FS Q    P +  KYE+ 
Sbjct: 587 HEHKNAVVNFSLQRWEQYDKPVPSQEPIVVQYGVRRYTIQPLFS-QGSNSPNNVHKYERF 645

Query: 784 LKHGKKYVASIFGFTTVTAAPVFFIK 809
           L      VA+       T +P  F K
Sbjct: 646 LHPDTVSVATCIAPVDFTQSPAIFFK 671

 Score = 18.1 bits (35), Expect = 2.6
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 664 SENLIKYSRKKFVQNCKIVNGEFT 687
           S+ +     KKF  N KI+  + T
Sbjct: 120 SKRIFNVHIKKFKSNLKIIIPDMT 143

 Score = 16.9 bits (32), Expect = 5.9
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 904 KVVSCDCKRIIMKRISLCGKIFKIHKKK 931
           K++ C     IM +     +IF +H KK
Sbjct: 103 KLLKCADDEGIMVQEVDSKRIFNVHIKK 130

 Score = 16.9 bits (32), Expect = 5.9
 Identities = 5/16 (31%), Positives = 11/16 (68%)

Query: 1005 GEQDLGPDNQPLELKE 1020
            G ++L P+ +  +L+E
Sbjct: 456  GFEELSPEEEERQLRE 471

Lambda     K      H
   0.320    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1562
Number of extensions: 75
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 6
Length of query: 1029
Length of database: 788
Length adjustment: 43
Effective length of query: 986
Effective length of database: 745
Effective search space:   734570
Effective search space used:   734570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 31 (17.2 bits)
S2: 31 (16.5 bits)