>YDR060W MAK21 SGDID:S000002467, Chr IV from 570645-573722, Verified
           ORF, "Constituent of 66S pre-ribosomal particles,
           required for large (60S) ribosomal subunit biogenesis;
           involved in nuclear export of pre-ribosomes; required
           for maintenance of dsRNA virus; homolog of human
           CAATT-binding protein"
          Length = 1025

 Score = 38.1 bits (87), Expect = 5e-06
 Identities = 41/181 (22%), Positives = 78/181 (43%), Gaps = 24/181 (13%)

Query: 354 QLYLEKYSNDEEKIHLEIIHNKNNIFSDRINNIVVLIKKNPLIYFIYIKVLIDFYNKKED 413
           Q Y E+++ D  +         +   +D+I+ + +LI+ +PL     ++ L+ +  KK  
Sbjct: 258 QTYYEEFTKDSSQAKFMSQILSDGTLNDKISAVTLLIQDSPLHNTKSLETLVSYCGKKSR 317

Query: 414 VFIKKSILECLKHIYLY-ILPNEYLLNIEDNNQIILHYILNIIFNRFNFKEYNFSSYYFF 472
               +S L  LK ++L  +LPN  L   +  NQ  L  +LN                   
Sbjct: 318 NSALQS-LNALKDLFLNGLLPNRKLRYFK--NQPGLSMMLN------------------- 355

Query: 473 LNTLIYIYSFENYLKKSFLQYIFILKNGIYSLIPSLFYLSANNINEFCLKKKENKFANLN 532
               + I+ FE+YLKK F + + +L+   +  I  +     N++ +    + E +F  L 
Sbjct: 356 -KKTLAIFYFEDYLKKLFFRVLEVLEVLSHDPIIHVRLQILNHVFDLLTNQPEQEFNLLR 414

Query: 533 I 533
           +
Sbjct: 415 L 415

 Score = 21.9 bits (45), Expect = 0.35
 Identities = 48/241 (19%), Positives = 85/241 (35%), Gaps = 61/241 (25%)

Query: 858  YFIIYNRCLSLRDK---------NNNQFNEKTK-------------KIE--DNKYLHSLN 893
            YF ++ + L   DK         N+  + EK K             KIE  +N+ L   N
Sbjct: 494  YFTLFEKFLINTDKDNTNGVVKSNSKSYEEKRKKNFKKGKHGGKSVKIEKTENEVLDEKN 553

Query: 894  VLSFLKVIKSV---------------------------QSYKIKINFLVLMFLLLYSSKQ 926
               F  ++  +                            ++   I  LVL+  +   +K 
Sbjct: 554  SKLFSALLTGINRAFPFAQIPASVYEVHMETLFKITHSSNFNTSIQALVLINQVTVKAKL 613

Query: 927  IDDNTYCYFYSILKDMNYYESEHTYNLYSLLTVLILTDN-NIIRNISFIKRIFQHSIHSK 985
              D  Y   Y  L D     S       +LL   +  D  N+ R  +F+KRI Q   H  
Sbjct: 614  NSDRYYRTLYESLFDPRLVNSSKQGIYLNLLYKSLKQDALNVERVEAFVKRILQVCSH-- 671

Query: 986  ESWTHVFSIMMIRYLILKKPEFIKYLYHEEKKL-----YENNLNYVKNNYTLKFKKYNQG 1040
              W +V +I    +L+++  + +  + +          YE++    + +  +K K+Y+  
Sbjct: 672  --WLNVGTITGFFFLLIQLAKTVPQIKNLLTNTPVDYEYESDAEEEQGDKDIKRKEYDGR 729

Query: 1041 K 1041
            K
Sbjct: 730  K 730

 Score = 18.9 bits (37), Expect = 2.9
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 6/36 (16%)

Query: 774 DDHHSEEINCSEDMHDVNITSEHVNEKEKGMKDEKD 809
           +++  EE N S D    + ++E    KEK  K+EKD
Sbjct: 167 EENTVEEANLSSDQEPESESAE----KEK--KEEKD 196

 Score = 18.5 bits (36), Expect = 3.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 1147 INSHENETKNELQSNSK 1163
            IN+ ++ T   ++SNSK
Sbjct: 503  INTDKDNTNGVVKSNSK 519

 Score = 18.1 bits (35), Expect = 5.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 542 NKGNPLLLNFLKYLIT 557
           N GNPL L+ L+  I+
Sbjct: 4   NNGNPLDLSSLRNKIS 19

 Score = 18.1 bits (35), Expect = 5.0
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 335 NDIYNLIYNIGLNM----IYNYYQLYLEKYSNDEEKIHL-EIIHNKNNIFSDRI 383
           ND+ N + N+G +       +   +  E  S+ E KI   E  H ++NI S  I
Sbjct: 99  NDLQNFMKNVGFDQHKLEDVDDDDIEEESTSSKESKIPAQEKEHAQSNIASSTI 152

Lambda     K      H
   0.319    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3561
Number of extensions: 198
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 1478
Length of database: 1025
Length adjustment: 47
Effective length of query: 1431
Effective length of database: 978
Effective search space:  1399518
Effective search space used:  1399518
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 33 (18.1 bits)
S2: 33 (17.3 bits)