Query= PF14_0550 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) hypothetical
protein
(1478 letters)
>YDR060W MAK21 SGDID:S000002467, Chr IV from 570645-573722, Verified
ORF, "Constituent of 66S pre-ribosomal particles,
required for large (60S) ribosomal subunit biogenesis;
involved in nuclear export of pre-ribosomes; required
for maintenance of dsRNA virus; homolog of human
CAATT-binding protein"
Length = 1025
Score = 38.1 bits (87), Expect = 5e-06
Identities = 41/181 (22%), Positives = 78/181 (43%), Gaps = 24/181 (13%)
Query: 354 QLYLEKYSNDEEKIHLEIIHNKNNIFSDRINNIVVLIKKNPLIYFIYIKVLIDFYNKKED 413
Q Y E+++ D + + +D+I+ + +LI+ +PL ++ L+ + KK
Sbjct: 258 QTYYEEFTKDSSQAKFMSQILSDGTLNDKISAVTLLIQDSPLHNTKSLETLVSYCGKKSR 317
Query: 414 VFIKKSILECLKHIYLY-ILPNEYLLNIEDNNQIILHYILNIIFNRFNFKEYNFSSYYFF 472
+S L LK ++L +LPN L + NQ L +LN
Sbjct: 318 NSALQS-LNALKDLFLNGLLPNRKLRYFK--NQPGLSMMLN------------------- 355
Query: 473 LNTLIYIYSFENYLKKSFLQYIFILKNGIYSLIPSLFYLSANNINEFCLKKKENKFANLN 532
+ I+ FE+YLKK F + + +L+ + I + N++ + + E +F L
Sbjct: 356 -KKTLAIFYFEDYLKKLFFRVLEVLEVLSHDPIIHVRLQILNHVFDLLTNQPEQEFNLLR 414
Query: 533 I 533
+
Sbjct: 415 L 415
Score = 21.9 bits (45), Expect = 0.35
Identities = 48/241 (19%), Positives = 85/241 (35%), Gaps = 61/241 (25%)
Query: 858 YFIIYNRCLSLRDK---------NNNQFNEKTK-------------KIE--DNKYLHSLN 893
YF ++ + L DK N+ + EK K KIE +N+ L N
Sbjct: 494 YFTLFEKFLINTDKDNTNGVVKSNSKSYEEKRKKNFKKGKHGGKSVKIEKTENEVLDEKN 553
Query: 894 VLSFLKVIKSV---------------------------QSYKIKINFLVLMFLLLYSSKQ 926
F ++ + ++ I LVL+ + +K
Sbjct: 554 SKLFSALLTGINRAFPFAQIPASVYEVHMETLFKITHSSNFNTSIQALVLINQVTVKAKL 613
Query: 927 IDDNTYCYFYSILKDMNYYESEHTYNLYSLLTVLILTDN-NIIRNISFIKRIFQHSIHSK 985
D Y Y L D S +LL + D N+ R +F+KRI Q H
Sbjct: 614 NSDRYYRTLYESLFDPRLVNSSKQGIYLNLLYKSLKQDALNVERVEAFVKRILQVCSH-- 671
Query: 986 ESWTHVFSIMMIRYLILKKPEFIKYLYHEEKKL-----YENNLNYVKNNYTLKFKKYNQG 1040
W +V +I +L+++ + + + + YE++ + + +K K+Y+
Sbjct: 672 --WLNVGTITGFFFLLIQLAKTVPQIKNLLTNTPVDYEYESDAEEEQGDKDIKRKEYDGR 729
Query: 1041 K 1041
K
Sbjct: 730 K 730
Score = 18.9 bits (37), Expect = 2.9
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 774 DDHHSEEINCSEDMHDVNITSEHVNEKEKGMKDEKD 809
+++ EE N S D + ++E KEK K+EKD
Sbjct: 167 EENTVEEANLSSDQEPESESAE----KEK--KEEKD 196
Score = 18.5 bits (36), Expect = 3.8
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 1147 INSHENETKNELQSNSK 1163
IN+ ++ T ++SNSK
Sbjct: 503 INTDKDNTNGVVKSNSK 519
Score = 18.1 bits (35), Expect = 5.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 542 NKGNPLLLNFLKYLIT 557
N GNPL L+ L+ I+
Sbjct: 4 NNGNPLDLSSLRNKIS 19
Score = 18.1 bits (35), Expect = 5.0
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 335 NDIYNLIYNIGLNM----IYNYYQLYLEKYSNDEEKIHL-EIIHNKNNIFSDRI 383
ND+ N + N+G + + + E S+ E KI E H ++NI S I
Sbjct: 99 NDLQNFMKNVGFDQHKLEDVDDDDIEEESTSSKESKIPAQEKEHAQSNIASSTI 152
Lambda K H
0.319 0.137 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3561
Number of extensions: 198
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 1478
Length of database: 1025
Length adjustment: 47
Effective length of query: 1431
Effective length of database: 978
Effective search space: 1399518
Effective search space used: 1399518
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 33 (18.1 bits)
S2: 33 (17.3 bits)