Query= PF14_0563 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) DEAD-box RNA
helicase, putative
(741 letters)
>FBgn0001942 type=protein;
loc=2L:join(5982820..5982821,5983010..5983236,
5984011..5984624,5984719..5984942,5985026..5985170);
ID=FBpp0078809; name=eIF-4a-PD;
parent=FBgn0001942,FBtr0079178;
dbxref=FlyBase:FBpp0078809,
FlyBase_Annotation_IDs:CG9075-PD,GB_protein:AAN10568.1,
GB_protein:AAN10568;
MD5=5891fcac3bcd1da6b7c83506890f24e3; release=r5.1;
species=Dmel; length=403;
Length = 403
Score = 224 bits (570), Expect = 9e-63
Identities = 139/405 (34%), Positives = 223/405 (55%), Gaps = 43/405 (10%)
Query: 325 NTWEELKIDNELIQILTYLKFLGPSKIQAYALPIILSSNKNLIAQSQNGSGKTLTFVIAM 384
+ ++++ + EL++ + F PS IQ A+ I +++IAQ+Q+G+GKT TF IA+
Sbjct: 30 DNFDDMNLREELLRGIYGYGFEKPSAIQQRAI-IPCVRGRDVIAQAQSGTGKTATFSIAI 88
Query: 385 LCKINRTLSSLQAVCICPTRELSQQNYDVVCNFTKYLNVKVFLAVPLCERYNKS----GG 440
L +I+ ++ QA+ + PTREL+ Q VV +Y+ V + + G
Sbjct: 89 LQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESG 148
Query: 441 YQIYVGTPGKTLDFLKRKFIDTKNIKLFVLDEADDLIDIKNNMSSQVETIKRFLPRSCQI 500
+ VGTPG+ D + RK + T+ IKLFVLDEAD+++ Q++ + + LP Q+
Sbjct: 149 CHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLS--RGFKDQIQDVFKMLPPDVQV 206
Query: 501 LLFSATYNDSVRKFADQFAPKATKISVRQEDLTLKCVKQYYLITENDEQKYYYLSELYCS 560
+L SAT V + + F I V++E+LTL+ +KQ+Y+ + + K L +LY +
Sbjct: 207 ILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDT 266
Query: 561 MTISQCVIFVNSKKSAYNLYNFMTENSHNVTLICADSIISRFTKNQIQKANVLGMDPKTR 620
++I+Q VIF N+++ L M+ ++ V+ + D M+ + R
Sbjct: 267 LSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGD------------------MEQRDR 308
Query: 621 DTLMADFKKGISKVLICTDLLSRGIDVPSISLVINFDLPYIYQGRIGDTLNNTSNQRVNM 680
+ +M F+ G S+VLI TDLL+RGIDV +SLVIN+DLP N
Sbjct: 309 EVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP------------------SNR 350
Query: 681 ETYIHRIGRTGRFGTKGMAINFISKNQMSHIKQIEEYYKCSIADL 725
E YIHRIGR GRFG KG+AINFI+ + +K IE++Y +I ++
Sbjct: 351 ENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIEQFYHTTIEEM 395
Lambda K H
0.314 0.131 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 525
Number of extensions: 21
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 741
Length of database: 403
Length adjustment: 35
Effective length of query: 706
Effective length of database: 368
Effective search space: 259808
Effective search space used: 259808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 27 (15.2 bits)
S2: 27 (15.0 bits)