Query= PF14_0599 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) hypothetical
protein
(807 letters)
>YPR173C VPS4 SGDID:S000006377, Chr XVI from 887833-886520, reverse
complement, Verified ORF, "AAA-type ATPase required for
efficient late endosome to vacuole transport; catalyzes
the release of an endosomal membrane-associated class E
VPS protein complex; cytoplasmic protein that is also
associated with an endosomal compartment"
Length = 437
Score = 37.7 bits (86), Expect = 1e-06
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 703 LVNKTIGENTKYIKNIFYVAYKNQPSVIIFDNID 736
LV+K +GE+ K +K +F +A +N+PS+I D +D
Sbjct: 202 LVSKWMGESEKLVKQLFAMARENKPSIIFIDEVD 235
Score = 23.9 bits (50), Expect = 0.020
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 571 HFYFNKFNMPSSLLIYGTDGVGKTTLMKFI 600
H + S +L+YG G GK+ L K +
Sbjct: 157 HLFKGNRKPTSGILLYGPPGTGKSYLAKAV 186
Score = 18.9 bits (37), Expect = 0.65
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 123 DVLRSKFTS--NDDEEQRKSYDKE 144
D++R+KFT N E+ +K + E
Sbjct: 54 DLIRAKFTEYLNRAEQLKKHLESE 77
Score = 18.1 bits (35), Expect = 1.1
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 13 NIIQKLTELLQNNKNLFVSIQCYDNNSYEIYNNLIEYIKLNL 54
+ + K EL+Q +L + Q + +Y Y N ++Y+ L L
Sbjct: 5 DFLTKGIELVQKAIDLDTATQYEE--AYTAYYNGLDYLMLAL 44
Score = 15.4 bits (28), Expect = 7.2
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 703 LVNKTIGENTKYIKNIFYVAYKN 725
LV K I +T Y AY N
Sbjct: 13 LVQKAIDLDTATQYEEAYTAYYN 35
Lambda K H
0.323 0.138 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 573
Number of extensions: 22
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 5
Length of query: 807
Length of database: 437
Length adjustment: 37
Effective length of query: 770
Effective length of database: 400
Effective search space: 308000
Effective search space used: 308000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 27 (15.4 bits)
S2: 27 (15.0 bits)