>YNL178W RPS3 SGDID:S000005122, Chr XIV from 302682-303404, Verified
           ORF, "Protein component of the small (40S) ribosomal
           subunit, has apurinic/apyrimidinic (AP) endonuclease
           activity; essential for viability; has similarity to E.
           coli S3 and rat S3 ribosomal proteins"
          Length = 240

 Score =  268 bits (684), Expect = 9e-77
 Identities = 141/217 (64%), Positives = 175/217 (80%), Gaps = 3/217 (1%)

Query: 1   MSAPISKKRKFINDGVFQAELNEFLARILAEDGYSGVEVRVTPIRTEVIIRATRTREVLG 60
           M A ISKKRK + DGVF AELNEF  R LAE+GYSGVEVRVTP +TEVIIRATRT++VLG
Sbjct: 1   MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLG 60

Query: 61  DKGRRIRELTSLVQKRFFNKSTNSVELFAERVEHRGLCAMAQAESLRYKLLKGLAVRRAC 120
           + GRRI ELT LVQKRF   +  ++ L+AERV+ RGL A+AQAES+++KLL GLA+RRA 
Sbjct: 61  ENGRRINELTLLVQKRF-KYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAA 119

Query: 121 YGVLRHIMESGAKGCEVIVSGKLRAQRAKSMKFRDGYLISTGEPSKRFVNTATRSAQLKQ 180
           YGV+R++MESGAKGCEV+VSGKLRA RAK+MKF DG+LI +G+P   F++TATR   ++Q
Sbjct: 120 YGVVRYVMESGAKGCEVVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVLMRQ 179

Query: 181 GVLGIKVKIMLPTAIDTRTGLTSILPDNISVLEPKTD 217
           GVLGIKVKIM   A  +RTG    LPD ++++EPK +
Sbjct: 180 GVLGIKVKIMRDPA-KSRTG-PKALPDAVTIIEPKEE 214

Lambda     K      H
   0.321    0.135    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 205
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 240
Length adjustment: 23
Effective length of query: 198
Effective length of database: 217
Effective search space:    42966
Effective search space used:    42966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 20 (12.1 bits)
S2: 20 (12.3 bits)