>FBgn0028692 type=protein;
            loc=3R:join(24979453..24980395,24980458..24981765,
            24982024..24982835); ID=FBpp0084754; name=Rpn2-PA;
            parent=FBgn0028692,FBtr0085385;
            dbxref=FlyBase:FBpp0084754,
            FlyBase_Annotation_IDs:CG11888-PA,GB_protein:AAF56868.1,
            GB_protein:AAF56868;
            MD5=6b7894fc98cb2788a266883fac70e746; release=r5.1;
            species=Dmel; length=1020;
          Length = 1020

 Score =  444 bits (1143), Expect = e-128
 Identities = 277/741 (37%), Positives = 404/741 (54%), Gaps = 52/741 (7%)

Query: 439  DVLKYISKKHIFYNKMKKLLYILTGKVTGNLYIEFLHRNNHADLILLDTYKNIVDSRSSI 498
            D L  + K H     ++KL+ IL+G+V+ +L ++FL R+NHADL +L   K  V  R SI
Sbjct: 324  DSLNEVEKLH--QKNIEKLISILSGEVSIDLQLQFLIRSNHADLQVLRGTKEAV--RVSI 379

Query: 499  THHGIVIAHALMQTGTTCDVFLRSNIEWLSKAINWEKFSATASLGVVYKGHVNESFMVLS 558
             H   VIA+A M +GTT D FLR N++WL++A NW K +ATASLGV+++GH  +S  ++ 
Sbjct: 380  CHTATVIANAFMHSGTTSDQFLRDNLDWLARATNWAKLTATASLGVIHRGHEKDSLALMQ 439

Query: 559  THLPYNDVSTEIANNINVGLAPSGVYSEGGSLYALGLIHANYNTNDKKVKNYLMSQLKSN 618
            ++LP                 PS  YSEGG+LYALGLIHAN+  N   + +YL+ QLK  
Sbjct: 440  SYLPKE-------------AGPSSGYSEGGALYALGLIHANHGAN---IIDYLLQQLKDA 483

Query: 619  MNDEVLQHXXXXXXXXXXXXDSNDENTYDELKAILYSDSAVAGESAAYAIGLLKLGSGDD 678
             N+ V                ++ ++ Y++LK  LY D AV GE+A  A+G++ LGS + 
Sbjct: 484  QNENV--RHGGCLGLGLAGMGTHRQDLYEQLKFNLYQDDAVTGEAAGIAMGMVMLGSKNA 541

Query: 679  KCIDELLAYAHDTQHEKITRACSISLGFVMFQKEREADSLIEELVSDKDAIIRYGGMFAI 738
            + I+++++YA +TQHEKI R  ++ +   MF +  EAD L+  L SDKD ++R  GM+ I
Sbjct: 542  QAIEDMVSYAQETQHEKILRGLAVGISLTMFSRLEEADPLVTSLSSDKDPVLRRSGMYTI 601

Query: 739  AMAYCGLSNCNKHIIKKLLHFSVSDVSDDVRRAAVIALGFVLCNSPNQVPKFLNLLIESY 798
            AMAY G  + NK  I+KLLH +VSDV+DDVRRAAV A+GF+L  SP Q P  ++LL ESY
Sbjct: 602  AMAYNGTGS-NK-AIRKLLHVAVSDVNDDVRRAAVTAIGFILFRSPEQCPSVVSLLAESY 659

Query: 799  NPHVRYGAALALGIACSATANEEAINMLMPLLT-DTTDFVRQSAFISLGLIFQQSNEHCN 857
            NPHVRYGAA+ALGIAC+ T   EAI +L P++  D  +FVRQ A I+  +I  Q  +   
Sbjct: 660  NPHVRYGAAMALGIACAGTGLREAIALLEPMVKFDPVNFVRQGALIASAMILIQHTDQSC 719

Query: 858  PNFKKYKEEIMKILSDKHEDIIAKFGAIVSAGLLDICGRNAISTFFTRRGNIIRPQAAAG 917
            P    +++   +++S+KHED++AK+GAI++ G++D  GRNA  +  +R G+    QA  G
Sbjct: 720  PKSTFFRQLYAEVISNKHEDVMAKYGAILAQGIIDAGGRNATLSLQSRTGH-TNLQAVVG 778

Query: 918  FCLFSQLWYWFPLIHMISLTFMPTCLIGLTEDLKVPKNFSILSTSNNQNFDYPSFLSXXX 977
               F+Q WYWFPL H +SL F PTC+IGL  DLK+PK     S +    + YP+ L    
Sbjct: 779  MLAFTQYWYWFPLAHTLSLAFTPTCVIGLNSDLKMPK-MEYKSAAKPSLYAYPAPLEEKK 837

Query: 978  XXXXXXXXXAVXXXXXXXXXXXXXXXXNDSKITKERTAQDDNSSVLSDGKSMKNLEILST 1037
                     AV                N  K   E+   D++S    +G ++K  E    
Sbjct: 838  SEEREKVATAV-----LSIAARQKRRENADKKEDEKMDVDEDS---KEGAAVKKDE---- 885

Query: 1038 AATIGQSSHVSHAESVEGSANDENSHDHAQDGSNISNVQXXXXXXXXXXXXXNENSNNNT 1097
             A   +          +     +   D  ++ +  S+ +              E ++   
Sbjct: 886  EAKADEKMVTDEKPKKKDEKEKKKEEDKEKEAAGTSSEKDKDKEKDKKEKKEPEPTSE-- 943

Query: 1098 VDMKNPCRVIKMQEKYIEYIPNSRYIPVLPTRKSGFIMLNDITPLEPSECIE-------I 1150
              ++NP RV++ Q K +  I    Y P+      G I+       E  E +E       +
Sbjct: 944  -ILQNPARVLRQQLKVLSVIDGQSYEPLKDVTIGGIIVFQHTGKAEDQELVEPVAAFGPM 1002

Query: 1151 NFEETSKKEAPPFEPFSWKEE 1171
            N EE   KE  P EPF + E+
Sbjct: 1003 NDEE---KEPEPPEPFEYIED 1020

 Score =  188 bits (477), Expect = 2e-51
 Identities = 111/319 (34%), Positives = 181/319 (56%), Gaps = 53/319 (16%)

Query: 13  VTSASGVIALLNEEETSLKLFGLEKLNAIVDVYWPELADSIFKIEELCEDEDFVGRELAN 72
           +TSA+G+I+LL+E    LK+F L+KL+ IVD +WPE+++SI KIE L ED  F   +LA 
Sbjct: 3   LTSAAGIISLLDEPMPDLKVFALKKLDNIVDEFWPEISESIEKIEMLHEDRSFPENKLAG 62

Query: 73  LLASKIYFHLEKYSEALKYALCAGKLFNIKEKSQYVETMLAKCIEKYVEIREMQYDIDYX 132
           ++ASK+++HL  + +AL YAL AG LF++  +++Y ET++AKCI+ Y+  R         
Sbjct: 63  MVASKVFYHLGSFEDALTYALGAGDLFDVNARNEYTETIIAKCIDFYIAQR--------- 113

Query: 133 XXXXXXXXXXXXXXXXXXXXXXDLVELNSHNELLNKETDIFRFDINNEINQKMELLVDEM 192
                                   VE   +     KE  +        +++++E +V+ M
Sbjct: 114 ------------------------VEFIEN----PKEASV--------VDERLEGIVNRM 137

Query: 193 IDVCIKSNDIKEALGVALDARRLDKVEYIIANAENKIEILAHSINNEKHINMNKSFRNEY 252
           I  C+  N  ++ALG+AL+ RR+D  +  I  +++   +LA++ N    +  N+ FRNE 
Sbjct: 138 IQRCLDDNQFRQALGIALETRRMDTFKDAIMKSDDVRGMLAYAYNVTMSLIQNRGFRNEV 197

Query: 253 FKLLVNLYLSLSEEELKTEYINLCECLYYIDDYKKVAEILLKL----LHNYHLMAYQISF 308
            + LV+LY  L       +Y+N+C+CL +++D   VAE+L  L    +   +LMAYQI+F
Sbjct: 198 LRCLVSLYRDLG----VPDYVNMCQCLIFLEDPFAVAEMLDNLTRSSVETNNLMAYQIAF 253

Query: 309 DLVDFENKIFLRNILGQIK 327
           DL +   + FL N+L  +K
Sbjct: 254 DLYESATQEFLGNVLQHLK 272

Lambda     K      H
   0.318    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2307
Number of extensions: 111
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 4
Length of query: 1172
Length of database: 1020
Length adjustment: 46
Effective length of query: 1126
Effective length of database: 974
Effective search space:  1096724
Effective search space used:  1096724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 32 (17.6 bits)
S2: 32 (16.9 bits)