>YIL075C RPN2 SGDID:S000001337, Chr IX from 220697-217860, reverse
            complement, Verified ORF, "Subunit of the 26S proteasome,
            substrate of the N-acetyltransferase Nat1p"
          Length = 945

 Score =  375 bits (963), Expect = e-108
 Identities = 228/716 (31%), Positives = 357/716 (49%), Gaps = 73/716 (10%)

Query: 457  LLYILTGKVTGNLYIEFLHRNNHADLILLDTYKNIVDSRSSITHHGIVIAHALMQTGTTC 516
            LL IL+G  T + Y  FL  N + D+ LL+  K+ +D + S+ H  + +A+  M  GTT 
Sbjct: 286  LLNILSGLPTCDYYNTFLLNNKNIDIGLLNKSKSSLDGKFSLFHTAVSVANGFMHAGTTD 345

Query: 517  DVFLRSNIEWLSKAINWEKFSATASLGVVYKGHVNESFMVLSTHLPYNDVSTEIANNINV 576
            + F+++N+ WL KA NW KF+ATASLGV++KG++ E   V++ +LP              
Sbjct: 346  NSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLP-------------- 391

Query: 577  GLAPSGVYSEGGSLYALGLIHANYNTNDKKVKNYLMSQLKSNMNDE---VLQHXXXXXXX 633
            G   S  + +GGSLY LGLI+A +  +       ++ +      DE   VL H       
Sbjct: 392  GSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 451

Query: 634  XXXXXDSNDENTYDELKAILYSDSAVAGESAAYAIGLLKLGSGDDKCIDELLAYAHDTQH 693
                  +N E  Y+ LK +LY+DSA +GE+AA  +GL  LG+G  + I ++  Y+ +TQH
Sbjct: 452  LAAMGSANIE-VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQH 510

Query: 694  EKITRACSISLGFVMFQKEREADSLIEELVSDKDAIIRYGGMFAIAMAYCGLSNCNKHII 753
              ITR  ++ L  + + ++  AD LI ++++  ++++RYGG F IA+AY G  N     +
Sbjct: 511  GNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN--NSAV 568

Query: 754  KKLLHFSVSDVSDDVRRAAVIALGFVLCNSPNQVPKFLNLLIESYNPHVRYGAALALGIA 813
            K+LLH +VSD +DDVRRAAVIALGFVL      VP+ + LL +S+N HVR G A ALGIA
Sbjct: 569  KRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIA 628

Query: 814  CSATANEEAINMLMPLLTDTTDFVRQSAFISLGLIFQQSNEHCNPNFKKYKEEIMKILSD 873
            C+    + AI++L PL  D  DFVRQ+A I+L +I  Q  E  NP      +  + ++++
Sbjct: 629  CAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITN 688

Query: 874  KHEDIIAKFGAIVSAGLLDICGRNAISTFFTRRGNIIRPQAAAGFCLFSQLWYWFPLIHM 933
            KH++ +AKFGA V+ G+++  GRN            +  ++  G  +FSQ WYWFPL H 
Sbjct: 689  KHQEGLAKFGACVAQGIMNAGGRNVTIQLENADTGTLDTKSVVGLVMFSQFWYWFPLAHF 748

Query: 934  ISLTFMPTCLIGLT-EDLKVPKNFSILSTSNNQNFDYPSFLSXXXXXXXXXXXXAVXXXX 992
            +SL+F PT +IG+   D  +PK F +   +    F YP                      
Sbjct: 749  LSLSFTPTTVIGIRGSDQAIPK-FQMNCYAKEDAFSYPRMYEE----------------- 790

Query: 993  XXXXXXXXXXXXNDSKITKERTAQDDNSSVLSDGKSMKNLEILSTAATIGQSSHVSHAES 1052
                                           + GK ++ +     + T    +     + 
Sbjct: 791  -------------------------------ASGKEVEKVATAVLSTTARAKARAKKTKK 819

Query: 1053 VEGSANDENSHDHAQ-DGSNISNVQXXXXXXXXXXXXXNENSNNNTVDMKNPCRVIKMQE 1111
             +G   +E   +H + +    +N +                 ++    + N  R++  Q 
Sbjct: 820  EKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNKYSSKPYKVDNMTRILPQQS 879

Query: 1112 KYIEYIPNSRYIPVLPTR-KSGFIMLNDITPLEPSECIEINFEETSKKEAPPFEPF 1166
            +YI +I + R++PV   +  +G ++L D  P EP   IE    +     AP   PF
Sbjct: 880  RYISFIKDDRFVPVRKFKGNNGVVVLRDREPKEPVALIE-TVRQMKDVNAPLPTPF 934

 Score =  131 bits (329), Expect = 3e-34
 Identities = 88/321 (27%), Positives = 162/321 (50%), Gaps = 53/321 (16%)

Query: 13  VTSASGVIALLNEEETSLKLFGLEKLNAIVDVYWPELADSIFKIEELCEDEDFVGRELAN 72
           +T+A+ ++ALL E + S+K + LE +N +VD  W E+++ +  IE L +D+ F  RE+A 
Sbjct: 3   LTTAAPLLALLRENQDSVKTYALESINNVVDQLWSEISNELPDIEALYDDDTFSDREMAA 62

Query: 73  LLASKIYFHLEKYSEALKYALCAGKLFNIKEKSQYVETMLAKCIEKYVEIREMQYDIDYX 132
           L+ASK+Y++L +Y  A+KYAL A   F+I EKSQ+VET+++K IE YV+    QY     
Sbjct: 63  LIASKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQY----- 117

Query: 133 XXXXXXXXXXXXXXXXXXXXXXDLVELNSHNELLNKETDIFRFDINNEINQKMELLVDEM 192
                                              K+   +  DI   I+ K+  + + M
Sbjct: 118 ----------------------------------TKDEQFYTKDI---IDPKLTSIFERM 140

Query: 193 IDVCIKSNDIKEALGVALDARRLDKVEYIIA------NAENKIEILAHSINNEKHINMNK 246
           I+ C+K++++K ALG+AL+  RLD +E  +       +    ++I+ + +        N 
Sbjct: 141 IEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNS 200

Query: 247 SFRNEYFKLLVNLYLSLSEEELKTEYINLCECLYYIDDYKKVAEILLKLL-HNYHLMAYQ 305
            FR+   +   +  +++       +Y+ L + +  ++D     ++  KL   N   ++ Q
Sbjct: 201 KFRSSILRKSFDFLMNMP----NCDYLTLNKVVVNLNDAGLALQLFKKLKEENDEGLSAQ 256

Query: 306 ISFDLVDFENKIFLRNILGQI 326
           I+FDLV   ++  L  ++ ++
Sbjct: 257 IAFDLVSSASQQLLEILVTEL 277

Lambda     K      H
   0.318    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2206
Number of extensions: 105
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 4
Length of query: 1172
Length of database: 945
Length adjustment: 45
Effective length of query: 1127
Effective length of database: 900
Effective search space:  1014300
Effective search space used:  1014300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 32 (17.6 bits)
S2: 32 (16.9 bits)