Query= PF14_0655 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) RNA helicase-1,
putative
(398 letters)
>FBgn0001942 type=protein;
loc=2L:join(5982820..5982821,5983010..5983236,
5984011..5984624,5984719..5984942,5985026..5985170);
ID=FBpp0078809; name=eIF-4a-PD;
parent=FBgn0001942,FBtr0079178;
dbxref=FlyBase:FBpp0078809,
FlyBase_Annotation_IDs:CG9075-PD,GB_protein:AAN10568.1,
GB_protein:AAN10568;
MD5=5891fcac3bcd1da6b7c83506890f24e3; release=r5.1;
species=Dmel; length=403;
Length = 403
Score = 511 bits (1316), Expect = e-149
Identities = 259/388 (66%), Positives = 309/388 (79%), Gaps = 2/388 (0%)
Query: 11 ENDIEGNTEEIVDTFDALGLNEKLLRGIYSYGFEKPSAIQQRGIKPILNGYDTIGQAQSG 70
E IE E+ D FD + L E+LLRGIY YGFEKPSAIQQR I P + G D I QAQSG
Sbjct: 18 EGVIESTWHEVYDNFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSG 77
Query: 71 TGKTATFVISSLQLINYDYVACQALILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTV 130
TGKTATF I+ LQ I+ CQALILAPTRELA QIQ+VV+ALG+Y+KV HAC+GGT
Sbjct: 78 TGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTN 137
Query: 131 VREDIDKLKQGVHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVF 190
VRED L+ G H+VVGTPGRVYDMI+++ L +KLF+LDEADEMLSRGFK QI +VF
Sbjct: 138 VREDARILESGCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVF 197
Query: 191 KKLVPDIQVALFSATMPQEILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKL 250
K L PD+QV L SATMP ++LE++ FMRDP +ILVKK+ELTLEGI+QFYV V++E WKL
Sbjct: 198 KMLPPDVQVILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKL 257
Query: 251 DTLCDLYETLTITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRS 310
TLCDLY+TL+ITQS+I+CNTR+KVD LTQEM FTVS MHGDM+Q+DR++IM++FRS
Sbjct: 258 GTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRS 317
Query: 311 GSTRVLVTTDLLARGIDVQQVSLVINYDLPASPDTYIHRIGRSGRFGRKGVAINFVTNXX 370
GS+RVL+TTDLLARGIDVQQVSLVINYDLP++ + YIHRIGR GRFGRKGVAINF+T+
Sbjct: 318 GSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITD-- 375
Query: 371 XXXXXXXXIESYYSTQIEEMPLEVADYL 398
IE +Y T IEEMP +AD +
Sbjct: 376 DDRRILKDIEQFYHTTIEEMPANIADLI 403
Lambda K H
0.321 0.138 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 521
Number of extensions: 19
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 403
Length adjustment: 31
Effective length of query: 367
Effective length of database: 372
Effective search space: 136524
Effective search space used: 136524
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 24 (14.0 bits)
S2: 24 (13.9 bits)