Query= PF14_0655 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) RNA helicase-1,
putative
(398 letters)
>FBgn0037573 type=protein;
loc=3R:join(4139060..4139192,4139253..4139619,
4139675..4139866,4139928..4140435); ID=FBpp0081324;
name=eIF4AIII-PA; parent=FBgn0037573,FBtr0081834;
dbxref=FlyBase:FBpp0081324,
FlyBase_Annotation_IDs:CG7483-PA,GB_protein:AAF54221.1,
GB_protein:AAF54221;
MD5=4f16f87bb2db6e9762ded7d42dd01615; release=r5.1;
species=Dmel; length=399;
Length = 399
Score = 495 bits (1274), Expect = e-144
Identities = 252/401 (62%), Positives = 311/401 (77%), Gaps = 5/401 (1%)
Query: 1 MSTKEETFNNENDIEGNTEE---IVDTFDALGLNEKLLRGIYSYGFEKPSAIQQRGIKPI 57
M+ K + +++E T E ++ TF+A+ L E+LLRGIY+YGFEKPSAIQQR I PI
Sbjct: 1 MARKNAQAEDLSNVEFETSEDVEVIPTFNAMNLKEELLRGIYAYGFEKPSAIQQRSITPI 60
Query: 58 LNGYDTIGQAQSGTGKTATFVISSLQLINYDYVACQALILAPTRELAQQIQKVVLALGDY 117
+ G D I QAQSGTGKTATF IS LQ ++ Q L L+PTRELA QIQKV+LALGD
Sbjct: 61 VKGRDVIAQAQSGTGKTATFSISILQSLDTTLRETQVLCLSPTRELAVQIQKVILALGDM 120
Query: 118 LKVKCHACVGGTVVREDIDKLKQGVHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEM 177
+ V+CH C+GGT + EDI KL G H+V GTPGRV+DMI +R L +K+ +LDEADEM
Sbjct: 121 MNVQCHVCIGGTNLGEDIRKLDYGQHIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEM 180
Query: 178 LSRGFKAQIYEVFKKLVPDIQVALFSATMPQEILELTTRFMRDPKTILVKKDELTLEGIR 237
L++GFK QIY+V++ L P QV L SAT+P EILE+T++FM DP ILVK+DELTLEGI+
Sbjct: 181 LNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIK 240
Query: 238 QFYVAVEKEEWKLDTLCDLYETLTITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMD 297
QF+VAVE+EEWK DTLCDLY+TLTITQ++I+CNT++KVD LT++M FTVS MHGDM
Sbjct: 241 QFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMP 300
Query: 298 QKDRDLIMREFRSGSTRVLVTTDLLARGIDVQQVSLVINYDLPASPDTYIHRIGRSGRFG 357
QK+RD IM+EFR+G +RVL+TTD+ ARGIDVQQVSLVINYDLP + + YIHRIGRSGRFG
Sbjct: 301 QKERDEIMKEFRAGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFG 360
Query: 358 RKGVAINFVTNXXXXXXXXXXIESYYSTQIEEMPLEVADYL 398
RKGVAINFV + IE YYSTQI+EMP+ VAD +
Sbjct: 361 RKGVAINFVKS--DDIRILRDIEQYYSTQIDEMPMNVADLI 399
Lambda K H
0.321 0.138 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 500
Number of extensions: 21
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 399
Length adjustment: 31
Effective length of query: 367
Effective length of database: 368
Effective search space: 135056
Effective search space used: 135056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 24 (14.0 bits)
S2: 24 (13.9 bits)