Query= PF14_0676 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) 20S proteasome
beta 4 subunit, putative
(214 letters)
>YER012W PRE1 SGDID:S000000814, Chr V from 177834-178430, Verified
ORF, "20S proteasome beta-type subunit; localizes to the
nucleus throughout the cell cycle"
Length = 198
Score = 94.7 bits (234), Expect = 1e-24
Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 20/190 (10%)
Query: 1 MDTLIGLRGNNFVVLAADTYSINSIIKLKNDDNTKFYDIHGNKCLLLGGSIGDRLQFGEF 60
MD ++G+R + V+LA+ I LK+ D+ K + + + G GD +QF E+
Sbjct: 1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDD-KTRQLSPHTLMSFAGEAGDTVQFAEY 59
Query: 61 IRKNVHLYQYQNNTDMFVKSFAFFTRKNLAYYLR-RNPFEVNCLXXXXXXXXXXXXXXXX 119
I+ N+ LY + + ++ ++ + F R+ LA +R R P++VN L
Sbjct: 60 IQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKP----- 114
Query: 120 XXXXXXXXXXDGYQLYWCDYLSNMDSVNKGAHGYGAYLVSAILDKYYHENLTVDEALDIF 179
+LY DYL + GAHGY + ++LD +Y ++T +E LD+
Sbjct: 115 -------------ELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLL 161
Query: 180 KLCFEELKKR 189
KLC +EL+KR
Sbjct: 162 KLCVQELEKR 171
Lambda K H
0.325 0.142 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 109
Number of extensions: 6
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 214
Length of database: 198
Length adjustment: 21
Effective length of query: 193
Effective length of database: 177
Effective search space: 34161
Effective search space used: 34161
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 19 (11.7 bits)
S2: 19 (11.9 bits)