Query= PF14_0676 Pf Annotation|Plasmodium_falciparum_TIGR|(protein coding) 20S proteasome beta 4 subunit, putative (214 letters)
>YER012W PRE1 SGDID:S000000814, Chr V from 177834-178430, Verified
           ORF, "20S proteasome beta-type subunit; localizes to the
           nucleus throughout the cell cycle"
          Length = 198

 Score = 94.7 bits (234), Expect = 1e-24
 Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 20/190 (10%)

Query: 1   MDTLIGLRGNNFVVLAADTYSINSIIKLKNDDNTKFYDIHGNKCLLLGGSIGDRLQFGEF 60
           MD ++G+R  + V+LA+       I  LK+ D+ K   +  +  +   G  GD +QF E+
Sbjct: 1   MDIILGIRVQDSVILASSKAVTRGISVLKDSDD-KTRQLSPHTLMSFAGEAGDTVQFAEY 59

Query: 61  IRKNVHLYQYQNNTDMFVKSFAFFTRKNLAYYLR-RNPFEVNCLXXXXXXXXXXXXXXXX 119
           I+ N+ LY  + + ++  ++ + F R+ LA  +R R P++VN L                
Sbjct: 60  IQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKP----- 114

Query: 120 XXXXXXXXXXDGYQLYWCDYLSNMDSVNKGAHGYGAYLVSAILDKYYHENLTVDEALDIF 179
                        +LY  DYL     +  GAHGY  +   ++LD +Y  ++T +E LD+ 
Sbjct: 115 -------------ELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLL 161

Query: 180 KLCFEELKKR 189
           KLC +EL+KR
Sbjct: 162 KLCVQELEKR 171
Lambda     K      H
   0.325    0.142    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 109
Number of extensions: 6
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 214
Length of database: 198
Length adjustment: 21
Effective length of query: 193
Effective length of database: 177
Effective search space:    34161
Effective search space used:    34161
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 19 (11.7 bits)
S2: 19 (11.9 bits)