Query= PFA0300c Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) vacuolar ATP
synthase, putative
(383 letters)
>YKL080W VMA5 SGDID:S000001563, Chr XI from 284674-285852, Verified
ORF, "Subunit C of the eight-subunit V1 peripheral
membrane domain of vacuolar H+-ATPase (V-ATPase), an
electrogenic proton pump found throughout the
endomembrane system; required for the V1 domain to
assemble onto the vacuolar membrane"
Length = 392
Score = 89.4 bits (220), Expect = 2e-22
Identities = 80/337 (23%), Positives = 150/337 (44%), Gaps = 20/337 (5%)
Query: 50 KFCSFDDLLKCADDLQKYDSYAYGCLKKIEKIAKEYDENIELKIIYQRQHIN---IDQYI 106
K S D L+ +++L K D+ + KI +I + +E Y+ IN + +Y+
Sbjct: 54 KIGSLDTLIVESEELSKVDNQIGASIGKIIEILQGLNETSTNA--YRTLPINNMPVPEYL 111
Query: 107 RRFTWDDAKYPRSRSLTDTIDVMINNITKLSDEIQIKSSMLNDLXXXXXXXVPKNDSNNF 166
F W K+ +S+ D I ++ N ++L +++ + N K + +
Sbjct: 112 ENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAERKK-TGDL 170
Query: 167 FLRNLNEILTPQTVSETDFI-ETEYLTTLIAYVPKNSIDDWLNNYEKFSSYVVPRSTEQF 225
+R+L++I+ P+ DF+ +E+LTT++ VPK+ D+ +YE S VVP S
Sbjct: 171 SVRSLHDIVKPE-----DFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASA--- 222
Query: 226 KDLIDKDGN-TLWXXXXXXXXXXXXXXXXXXXXXXXXXXXYDEKQYNDMMESRTKVEAEI 284
+I +D L+ Y E+ + + + +
Sbjct: 223 -SVIAEDAEYVLFNVHLFKKNVQEFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLE 281
Query: 285 IRQETFLRRMCLAAFSDIFIAFIHINILRVFCESVLRFGVPPNFASFSIRINGESKEKKV 344
L R+ A+ D+FI + HI LRV+ ESVLR+G+PP+F I + ++ K
Sbjct: 282 QSLRVQLVRLAKTAYVDVFINWFHIKALRVYVESVLRYGLPPHFNIKIIAVPPKNL-SKC 340
Query: 345 RKKLYDIFS--SSDSIGKNYIKRSDENDEEIYPYVSV 379
+ +L D F ++ K+ + ++ D ++ Y S+
Sbjct: 341 KSELIDAFGFLGGNAFMKDKKGKINKQDTSLHQYASL 377
Score = 15.0 bits (27), Expect = 3.9
Identities = 4/9 (44%), Positives = 6/9 (66%)
Query: 210 YEKFSSYVV 218
YE F Y++
Sbjct: 382 YEPFVMYII 390
Lambda K H
0.321 0.137 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 328
Number of extensions: 17
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 4
Length of query: 383
Length of database: 392
Length adjustment: 30
Effective length of query: 353
Effective length of database: 362
Effective search space: 127786
Effective search space used: 127786
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 24 (14.0 bits)
S2: 24 (13.9 bits)