>YPL217C BMS1 SGDID:S000006138, Chr XVI from 143170-139619, reverse
           complement, Verified ORF, "Essential conserved nucleolar
           GTP-binding protein required for synthesis of 40S
           ribosomal subunits and for processing of the 35S
           pre-rRNA at sites A0, A1, and A2; interacts with Rcl1p,
           has similarity to Tsr1p"
          Length = 1183

 Score =  180 bits (457), Expect = 7e-49
 Identities = 133/417 (31%), Positives = 195/417 (46%), Gaps = 93/417 (22%)

Query: 34  AFAFSGGIKSAHRRKQHLFELEEKKLRVQKVYKEGNKSSP-LIVVIQGAKGVGKSTLLKS 92
           AFA +   K A R  Q   ++ E+KL V  V +      P  IV + G  G GK+TL++S
Sbjct: 30  AFAVAAPGKMA-RTMQRSSDVNERKLHVPMVDRTPEDDPPPFIVAVVGPPGTGKTTLIRS 88

Query: 93  LIKYYVGITINNIKGPISIFTKNLKRYTFIEVN-DDILHMIDVAKIADICILVIDGSYGI 151
           L++     T+N+I+GPI++ +   +R TF+E   DD+  MID+AKIAD+ +L+IDG++G 
Sbjct: 89  LVRRMTKSTLNDIQGPITVVSGKHRRLTFLECPADDLNAMIDIAKIADLVLLLIDGNFGF 148

Query: 152 ELETLEFLNILYTHGLPKVLGVVTHLDXXXXXXXXXXXXXXXXXXXXEELVEGSKLFFLS 211
           E+ET+EFLNI   HG+P+VLGV THLD                     E+ +G+KLF+LS
Sbjct: 149 EMETMEFLNIAQHHGMPRVLGVATHLDLFKSQSTLRASKKRLKHRFWTEVYQGAKLFYLS 208

Query: 212 GIQNNRYNKTEIRNLCKFLSVIKKPIISWREQHGYILGLKLDVDDLLINNQITSQKNNLQ 271
           G+ N RY   EI NL +F+SV+K   + WR +H Y+L  +    DL     I +Q   LQ
Sbjct: 209 GVINGRYPDREILNLSRFISVMKFRPLKWRNEHPYMLADRF--TDLTHPELIETQ--GLQ 264

Query: 272 SEHVHNENYVNHASYXXXXXXXXXXXKKLTNFLTNCDEKIKISIEGYVYGSKI--YKNQK 329
            +                                      K++I GY++G+ +      +
Sbjct: 265 IDR-------------------------------------KVAIYGYLHGTPLPSAPGTR 287

Query: 330 VHIPNIGDVEIDNIQILQEPF-------KLDE---------------------------- 354
           VHI  +GD  +  I+ L +P        KLD+                            
Sbjct: 288 VHIAGVGDFSVAQIEKLPDPCPTPFYQQKLDDFEREKMKEEAKANGEITTASTTRRRKRL 347

Query: 355 QKKNPNIYAPMSDVGNLTFDFDNMYIHIPKNKVNFTREEFLLADQREETIPGDHSGE 411
             K+  IYAPMSDVG +  D D +YI I K             ++    +PG   GE
Sbjct: 348 DDKDKLIYAPMSDVGGVLMDKDAVYIDIGKK------------NEEPSFVPGQERGE 392

 Score =  158 bits (399), Expect = 3e-42
 Identities = 83/204 (40%), Positives = 119/204 (58%), Gaps = 5/204 (2%)

Query: 1079 GGIQTYEEKDSLIHCRIKKHRWFPKLLRSNDPLIFSVGWRRYQSIPIYSISERNNVRLRY 1138
            GG+   E K  ++  R+++HRW  K+L++NDPL+ S+GWRR+Q++PIY+ ++ +  R R 
Sbjct: 813  GGLLPTEIKFGIVKARLRRHRWHKKILKTNDPLVLSLGWRRFQTLPIYTTTD-SRTRTRM 871

Query: 1139 LKYTTEHMHCNCTFYGPLASVNS---GILALYNYKKVPFYRICINGLIIETXXXXXXXXX 1195
            LKYT EH +CN  FYGPL S N+   G+  + N      +RI   G++ E          
Sbjct: 872  LKYTPEHTYCNAAFYGPLCSPNTPFCGVQIVANSDTGNGFRIAATGIVEEIDVNIEIVKK 931

Query: 1196 XXXXGEPYKIFKNTAFVKNMFNSDLEVCKFLNCPVVTPS-XXXXXXXXXXXXXXDFRCTF 1254
                G PYKIFKNTAF+K+MF+S +EV +F    + T S                +R  F
Sbjct: 932  LKLVGFPYKIFKNTAFIKDMFSSAMEVARFEGAQIKTVSGIRGEIKRALSKPEGHYRAAF 991

Query: 1255 ADKIRMSDIVILKLYVNVKIKKFY 1278
             DKI MSDIVIL+ +  V++KKFY
Sbjct: 992  EDKILMSDIVILRSWYPVRVKKFY 1015

 Score = 27.3 bits (59), Expect = 0.009
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 1375 KLAAKWYQMLHTIKKNILDQKKAKSQLSYHKKLKEKLKIQQAKTQVVKQRKKISYKKGRK 1434
            K A  + Q + TI K    ++K +      ++LK+  K+++ K+Q  K++KK  + +  K
Sbjct: 1107 KKARSFIQKVLTISKAKDSKRKEQKASQRKERLKKLAKMEEEKSQRDKEKKKEYFAQNGK 1166

 Score = 20.4 bits (41), Expect = 1.1
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 7/41 (17%)

Query: 337 DVEIDNIQILQEPFKLDEQKKNPNIYAPMSDVGNLTFDFDN 377
           D +IDN+   +EP+  D+  ++       S+   +  DF+N
Sbjct: 470 DADIDNLPSDEEPYTNDDDVQD-------SEPRMVEIDFNN 503

 Score = 17.7 bits (34), Expect = 7.4
 Identities = 6/15 (40%), Positives = 9/15 (60%)

Query: 490 ENSDKSSHHNKQSND 504
           +NSDK S    ++ D
Sbjct: 676 DNSDKESEDEDENED 690

Lambda     K      H
   0.318    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2938
Number of extensions: 142
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 1434
Length of database: 1183
Length adjustment: 48
Effective length of query: 1386
Effective length of database: 1135
Effective search space:  1573110
Effective search space used:  1573110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 33 (18.0 bits)
S2: 33 (17.3 bits)